HL_4WT8_118

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_118 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.0993

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4WT8|1|C1|C|2335
4WT8|1|C1|G|2336
4WT8|1|C1|C|2337
4WT8|1|C1|A|2338
4WT8|1|C1|A|2339
4WT8|1|C1|G|2340
4WT8|1|C1|G|2341
4WT8|1|C1|G|2342

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C4

Transfer RNA; tRNA

Chain CP

50S ribosomal protein L16

Chain Ca

50S ribosomal protein L27