HL_4WT8_125

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_125 not in the Motif Atlas

Homologous match to HL_7RQB_063

Geometric discrepancy: 0.0891

The information below is about HL_7RQB_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4WT8|1|C1|C|2605
4WT8|1|C1|G|2606
4WT8|1|C1|U|2607
4WT8|1|C1|G|2608
4WT8|1|C1|A|2609
4WT8|1|C1|G|2610

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C4

Transfer RNA; tRNA

Chain CB

50S ribosomal protein L2