HL_4WT8_148

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4WT8|1|D1|A|184

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_148 not in the Motif Atlas

Homologous match to HL_7RQB_006

Geometric discrepancy: 0.0823

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4WT8|1|D1|G|182
4WT8|1|D1|A|183
4WT8|1|D1|A|184
4WT8|1|D1|A|185
4WT8|1|D1|C|186
4WT8|1|D1|A|187
4WT8|1|D1|U|188
4WT8|1|D1|C|189

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DH

50S ribosomal protein L28

Chain DO

50S ribosomal protein L15