HL_4WT8_169

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

4WT8|1|D1|U|1002, 4WT8|1|D1|C|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_169 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.0973

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4WT8|1|D1|C|999
4WT8|1|D1|G|1000
4WT8|1|D1|A|1001
4WT8|1|D1|U|1002
4WT8|1|D1|A|1003
4WT8|1|D1|A|1004
4WT8|1|D1|C|1005
4WT8|1|D1|G|1006

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DP

50S ribosomal protein L16

Chain Ds

5S ribosomal RNA; 5S rRNA