HL_4WT8_172

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGAUGACC

Length

9 nucleotides

Bulged bases

4WT8|1|D1|A|1218, 4WT8|1|D1|U|1219, 4WT8|1|D1|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_172 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2776

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4WT8|1|D1|G|1215
4WT8|1|D1|G|1216
4WT8|1|D1|G|1217
4WT8|1|D1|A|1218
4WT8|1|D1|U|1219
4WT8|1|D1|G|1220
4WT8|1|D1|A|1221
4WT8|1|D1|C|1222
4WT8|1|D1|C|1223

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains