HL_4WT8_175

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

4WT8|1|D1|G|1370, 4WT8|1|D1|U|1374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_175 not in the Motif Atlas

Geometric match to HL_4WF9_033

Geometric discrepancy: 0.0557

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4WT8|1|D1|G|1369
4WT8|1|D1|G|1370
4WT8|1|D1|U|1371
4WT8|1|D1|C|1372
4WT8|1|D1|G|1373
4WT8|1|D1|U|1374
4WT8|1|D1|C|1375

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DQ

50S ribosomal protein L17

Chain DW

50S ribosomal protein L22