HL_4WT8_197

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

4WT8|1|D1|G|2318, 4WT8|1|D1|A|2322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_197 not in the Motif Atlas

Homologous match to HL_4WF9_051

Geometric discrepancy: 0.4238

The information below is about HL_4WF9_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WT8|1|D1|G|2314
4WT8|1|D1|G|2315
4WT8|1|D1|A|2316
4WT8|1|D1|C|2317
4WT8|1|D1|G|2318
4WT8|1|D1|G|2319
4WT8|1|D1|A|2320
4WT8|1|D1|A|2321
4WT8|1|D1|A|2322
4WT8|1|D1|U|2323
4WT8|1|D1|C|2324

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain D4

Transfer RNA; tRNA

Chain DE

50S ribosomal protein L5