HL_4WT8_209

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGCGUCAAGCC

Length

11 nucleotides

Bulged bases

4WT8|1|D1|U|2808

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_209 not in the Motif Atlas

Geometric match to HL_4V9K_033

Geometric discrepancy: 0.3394

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

4WT8|1|D1|G|2804
4WT8|1|D1|G|2805
4WT8|1|D1|C|2806
4WT8|1|D1|G|2807
4WT8|1|D1|U|2808
4WT8|1|D1|C|2809
4WT8|1|D1|A|2810
4WT8|1|D1|A|2811
4WT8|1|D1|G|2812
4WT8|1|D1|C|2813
4WT8|1|D1|C|2814

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains