HL_4WT8_227

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCCUUGGG

Length

8 nucleotides

Bulged bases

4WT8|1|Bb|U|190, 4WT8|1|Bb|G|191

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_227 not in the Motif Atlas

Geometric match to HL_1FIR_001

Geometric discrepancy: 0.3653

The information below is about HL_1FIR_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

18

Unit IDs

4WT8|1|Bb|C|186
4WT8|1|Bb|C|187
4WT8|1|Bb|C|188
4WT8|1|Bb|U|189
4WT8|1|Bb|U|190
4WT8|1|Bb|G|191
4WT8|1|Bb|G|192
4WT8|1|Bb|G|193

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BR

30S ribosomal protein S17

Chain BU

30S ribosomal protein S20