HL_4WU1_023

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WU1_023 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3438

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4WU1|1|13|C|1028|||A
4WU1|1|13|C|1028|||B
4WU1|1|13|G|1029
4WU1|1|13|C|1030
4WU1|1|13|G|1031
4WU1|1|13|A|1032
4WU1|1|13|G|1032|||A
4WU1|1|13|G|1032|||B

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA