3D structure

PDB id
4WU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
4WU1|1|14|A|2750, 4WU1|1|14|G|2751, 4WU1|1|14|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4WU1_100 not in the Motif Atlas
Homologous match to HL_7A0S_065
Geometric discrepancy: 0.2252
The information below is about HL_7A0S_065
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

4WU1|1|14|C|2745
4WU1|1|14|U|2746
4WU1|1|14|G|2747
4WU1|1|14|A|2748
4WU1|1|14|A|2749
4WU1|1|14|A|2750
4WU1|1|14|G|2751
4WU1|1|14|C|2752
4WU1|1|14|A|2753
4WU1|1|14|U|2754
4WU1|1|14|C|2755
4WU1|1|14|U|2756
4WU1|1|14|A|2757
4WU1|1|14|A|2758
4WU1|1|14|G|2759

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L13
Chain 59
50S ribosomal protein L6

Coloring options:


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