3D structure

PDB id
4WU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGUAAUGGC
Length
9 nucleotides
Bulged bases
4WU1|1|1G|G|266
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4WU1_110 not in the Motif Atlas
Homologous match to HL_4LFB_006
Geometric discrepancy: 0.0776
The information below is about HL_4LFB_006
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_84299.4
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

4WU1|1|1G|G|259
4WU1|1|1G|G|260
4WU1|1|1G|U|261
4WU1|1|1G|A|262
4WU1|1|1G|A|263
4WU1|1|1G|U|264
4WU1|1|1G|G|265
4WU1|1|1G|G|266
4WU1|1|1G|C|267

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 8A
30S ribosomal protein S17
Chain BA
30S ribosomal protein S20

Coloring options:


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