3D structure

PDB id
4WU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAAGCAACGCG
Length
12 nucleotides
Bulged bases
4WU1|1|1G|G|971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4WU1_125 not in the Motif Atlas
Geometric match to HL_8KAH_003
Geometric discrepancy: 0.3212
The information below is about HL_8KAH_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89457.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
2

Unit IDs

4WU1|1|1G|C|962
4WU1|1|1G|G|963
4WU1|1|1G|A|964
4WU1|1|1G|A|965
4WU1|1|1G|G|966
4WU1|1|1G|C|967
4WU1|1|1G|A|968
4WU1|1|1G|A|969
4WU1|1|1G|C|970
4WU1|1|1G|G|971
4WU1|1|1G|C|972
4WU1|1|1G|G|973

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 1A
30S ribosomal protein S10
Chain 2L
Transfer RNA; tRNA
Chain 5A
30S ribosomal protein S14 type Z
Chain 82
30S ribosomal protein S9

Coloring options:


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