HL_4WU1_240

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCGAGC(OMG)GCCAAAGG

Length

15 nucleotides

Bulged bases

4WU1|1|3L|C|16, 4WU1|1|3L|OMG|17, 4WU1|1|3L|G|18, 4WU1|1|3L|A|21

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WU1_240 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3948

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4WU1|1|3L|C|11
4WU1|1|3L|C|12
4WU1|1|3L|G|13
4WU1|1|3L|A|14
4WU1|1|3L|G|15
4WU1|1|3L|C|16
4WU1|1|3L|OMG|17
4WU1|1|3L|G|18
4WU1|1|3L|C|19
4WU1|1|3L|C|20
4WU1|1|3L|A|21
4WU1|1|3L|A|22
4WU1|1|3L|A|23
4WU1|1|3L|G|24
4WU1|1|3L|G|25

Current chains

Chain 3L

tRNA-Tyr

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 2A

30S ribosomal protein S11

Chain 79

50S ribosomal protein L1