HL_4WWW_065

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

4WWW|1|RA|U|1325, 4WWW|1|RA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WWW_065 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.0714

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4WWW|1|RA|G|1324
4WWW|1|RA|U|1325
4WWW|1|RA|U|1326
4WWW|1|RA|A|1327
4WWW|1|RA|A|1328
4WWW|1|RA|U|1329
4WWW|1|RA|C|1330

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RN

50S ribosomal protein L17

Chain RS

50S ribosomal protein L22