4WWW Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4WWW_001 | 1/QA/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_4WWW_002 | 1/QA/83:86 | No text annotation | geometric HL_8VM9_005 HL_32346.4 | |
| HL_4WWW_003 | 1/QA/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.8 | |
| HL_4WWW_004 | 1/QA/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.8 | |
| HL_4WWW_005 | 1/QA/207:212 | No text annotation | ||
| HL_4WWW_006 | 1/QA/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_4WWW_007 | 1/QA/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.8 | |
| HL_4WWW_008 | 1/QA/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_4WWW_009 | 1/QA/342:347 | UNCG | homologous HL_5J7L_009 HL_34617.5 | |
| HL_4WWW_010 | 1/QA/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.8 | |
| HL_4WWW_011 | 1/QA/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_4WWW_012 | 1/QA/462:470 | GNRA related | homologous HL_5J7L_012 HL_81538.2 | |
| HL_4WWW_013 | 1/QA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_4WWW_014 | 1/QA/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_4WWW_015 | 1/QA/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_4WWW_016 | 1/QA/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.8 | |
| HL_4WWW_017 | 1/QA/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_4WWW_018 | 1/QA/840:846 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_4WWW_019 | 1/QA/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.8 | |
| HL_4WWW_020 | 1/QA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_4WWW_021 | 1/QA/963:972 | No text annotation | homologous HL_5J7L_021 HL_50779.4 | |
| HL_4WWW_022 | 1/QA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_4WWW_023 | 1/QA/1028:1033 | No text annotation | geometric HL_6CZR_082 NA | |
| HL_4WWW_024 | 1/QA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_4WWW_025 | 1/QA/1089:1096 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_4WWW_026 | 1/QA/1133:1141 | No text annotation | ||
| HL_4WWW_027 | 1/QA/1165:1171 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_4WWW_028 | 1/QA/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.8 | |
| HL_4WWW_029 | 1/QA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4WWW_030 | 1/QA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4WWW_031 | 1/QA/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_4WWW_032 | 1/QA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
| HL_4WWW_033 | 1/RA/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_4WWW_034 | 1/RA/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_4WWW_035 | 1/RA/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_4WWW_036 | 1/RA/137:142 | No text annotation | homologous HL_5J7L_137 HL_32392.1 | |
| HL_4WWW_037 | 1/RA/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_4WWW_038 | 1/RA/194:201 | No text annotation | geometric HL_5J7L_139 HL_30068.2 | |
| HL_4WWW_039 | 1/RA/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_4WWW_040 | 1/RA/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_4WWW_041 | 1/RA/305:312 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_01609.3 | |
| HL_4WWW_042 | 1/RA/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_4WWW_043 | 1/RA/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_4WWW_044 | 1/RA/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_4WWW_045 | 1/RA/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_4WWW_046 | 1/RA/462:467 | GNRA | homologous HL_7A0S_015 HL_37824.8 | |
| HL_4WWW_047 | 1/RA/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.8 | |
| HL_4WWW_048 | 1/RA/543:550 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_4WWW_049 | 1/RA/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.9 | |
| HL_4WWW_050 | 1/RA/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_4WWW_051 | 1/RA/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.8 | |
| HL_4WWW_052 | 1/RA/641:647 | No text annotation | homologous HL_5J7L_153 HL_13529.1 | |
| HL_4WWW_053 | 1/RA/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_4WWW_054 | 1/RA/744:753 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
| HL_4WWW_055 | 1/RA/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4WWW_056 | 1/RA/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_4WWW_058 | 1/RA/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.8 | |
| HL_4WWW_059 | 1/RA/978:985 | No text annotation | homologous HL_4WF9_028 HL_42998.2 | |
| HL_4WWW_060 | 1/RA/1064:1074 | No text annotation | ||
| HL_4WWW_061 | 1/RA/1092:1099 | No text annotation | geometric HL_4V9F_007 HL_04783.2 | |
| HL_4WWW_062 | 1/RA/1172:1177 | No text annotation | ||
| HL_4WWW_063 | 1/RA/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.8 | |
| HL_4WWW_064 | 1/RA/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.9 | |
| HL_4WWW_065 | 1/RA/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_4WWW_066 | 1/RA/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.8 | |
| HL_4WWW_067 | 1/RA/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_4WWW_068 | 1/RA/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 HL_22622.1 | |
| HL_4WWW_209 | 1/RA/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_4WWW_070 | 1/RA/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_4WWW_071 | 1/RA/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_4WWW_072 | 1/RA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4WWW_073 | 1/RA/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.8 | |
| HL_4WWW_074 | 1/RA/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_4WWW_075 | 1/RA/1728:1731 | No text annotation | homologous HL_5J7L_176 HL_32346.4 | |
| HL_4WWW_076 | 1/RA/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
| HL_4WWW_077 | 1/RA/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_4WWW_078 | 1/RA/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_4WWW_079 | 1/RA/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.8 | |
| HL_4WWW_080 | 1/RA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4WWW_081 | 1/RA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4WWW_082 | 1/RA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4WWW_084 | 1/RA/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_4WWW_085 | 1/RA/2248:2256 | No text annotation | homologous HL_5J7L_186 HL_85367.2 | |
| HL_4WWW_086 | 1/RA/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_4WWW_217 | 1/RA/2304:2312 | No text annotation | homologous HL_9DFE_198 HL_50860.2 | |
| HL_4WWW_088 | 1/RA/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_4WWW_089 | 1/RA/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.8 | |
| HL_4WWW_090 | 1/RA/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.8 | |
| HL_4WWW_091 | 1/RA/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_4WWW_092 | 1/RA/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_4WWW_093 | 1/RA/2528:2535 | No text annotation | homologous HL_5J7L_194 HL_31585.4 | |
| HL_4WWW_094 | 1/RA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4WWW_095 | 1/RA/2594:2599 | GNRA | homologous HL_5J7L_196 HL_37824.8 | |
| HL_4WWW_096 | 1/RA/2658:2663 | GNRA | geometric HL_5J7L_197 HL_37824.8 | |
| HL_4WWW_097 | 1/RA/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_4WWW_098 | 1/RA/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_4WWW_099 | 1/RA/2796:2799 | No text annotation | geometric HL_5TBW_068 NA | |
| HL_4WWW_100 | 1/RA/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_4WWW_101 | 1/RA/2856:2861 | GNRA | homologous HL_5J7L_202 HL_37824.8 | |
| HL_4WWW_210 | 1/RB/34:48 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
| HL_4WWW_102 | 1/RB/38:44 | No text annotation | geometric HL_5J7L_203 HL_47787.2 | |
| HL_4WWW_103 | 1/RB/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 | |
| HL_4WWW_104 | 1/XA/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_4WWW_105 | 1/XA/83:86 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
| HL_4WWW_106 | 1/XA/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.8 | |
| HL_4WWW_107 | 1/XA/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.8 | |
| HL_4WWW_109 | 1/XA/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_4WWW_110 | 1/XA/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.8 | |
| HL_4WWW_111 | 1/XA/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_4WWW_112 | 1/XA/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_4WWW_113 | 1/XA/379:384 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_4WWW_114 | 1/XA/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_4WWW_115 | 1/XA/462:470 | No text annotation | ||
| HL_4WWW_116 | 1/XA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_4WWW_117 | 1/XA/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_4WWW_118 | 1/XA/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_4WWW_119 | 1/XA/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.8 | |
| HL_4WWW_120 | 1/XA/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_4WWW_121 | 1/XA/840:846 | No text annotation | geometric HL_5TBW_044 NA | |
| HL_4WWW_122 | 1/XA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
| HL_4WWW_123 | 1/XA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_4WWW_124 | 1/XA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4WWW_125 | 1/XA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_4WWW_126 | 1/XA/1028:1033 | Mini UNCG | geometric HL_4LFB_005 HL_48778.2 | |
| HL_4WWW_127 | 1/XA/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.8 | |
| HL_4WWW_128 | 1/XA/1089:1096 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_4WWW_129 | 1/XA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_4WWW_130 | 1/XA/1165:1171 | GNRA | homologous HL_5J7L_026 HL_93535.1 | |
| HL_4WWW_131 | 1/XA/1265:1270 | No text annotation | homologous HL_6CZR_099 NA | |
| HL_4WWW_132 | 1/XA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 HL_02887.3 | |
| HL_4WWW_133 | 1/XA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4WWW_212 | 1/XA/1445:1457 | No text annotation | ||
| HL_4WWW_134 | 1/XA/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_4WWW_135 | 1/XA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
| HL_4WWW_136 | 1/YA/59:68 | Pseudoknot geometry | geometric HL_6N5P_003 HL_93324.4 | |
| HL_4WWW_137 | 1/YA/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_4WWW_138 | 1/YA/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_4WWW_139 | 1/YA/137:142 | No text annotation | geometric HL_4V88_198 NA | |
| HL_4WWW_140 | 1/YA/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_4WWW_213 | 1/YA/188:208 | No text annotation | ||
| HL_4WWW_141 | 1/YA/194:201 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_4WWW_142 | 1/YA/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_4WWW_143 | 1/YA/246:252 | No text annotation | homologous HL_4WF9_008 HL_37369.2 | |
| HL_4WWW_144 | 1/YA/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_4WWW_214 | 1/YA/319:323 | No text annotation | homologous HL_9DFE_010 HL_75660.5 | |
| HL_4WWW_215 | 1/YA/326:336 | No text annotation | ||
| HL_4WWW_145 | 1/YA/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_4WWW_146 | 1/YA/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_4WWW_147 | 1/YA/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_4WWW_148 | 1/YA/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4WWW_149 | 1/YA/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.8 | |
| HL_4WWW_150 | 1/YA/543:550 | No text annotation | homologous HL_5J7L_149 HL_09452.1 | |
| HL_4WWW_151 | 1/YA/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 HL_28252.9 | |
| HL_4WWW_152 | 1/YA/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_4WWW_153 | 1/YA/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.8 | |
| HL_4WWW_154 | 1/YA/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.8 | |
| HL_4WWW_155 | 1/YA/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_4WWW_156 | 1/YA/744:753 | No text annotation | homologous HL_7A0S_022 HL_88205.2 | |
| HL_4WWW_157 | 1/YA/779:785 | UNCG | geometric HL_6JQ6_004 HL_34617.5 | |
| HL_4WWW_158 | 1/YA/826:831 | No text annotation | homologous HL_7A0S_024 HL_55195.3 | |
| HL_4WWW_160 | 1/YA/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.8 | |
| HL_4WWW_161 | 1/YA/978:985 | No text annotation | homologous HL_4WF9_028 HL_42998.2 | |
| HL_4WWW_162 | 1/YA/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_4WWW_163 | 1/YA/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_4WWW_164 | 1/YA/1172:1177 | No text annotation | ||
| HL_4WWW_165 | 1/YA/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.8 | |
| HL_4WWW_166 | 1/YA/1281:1289 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_165 HL_28252.9 | |
| HL_4WWW_167 | 1/YA/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_4WWW_168 | 1/YA/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.8 | |
| HL_4WWW_169 | 1/YA/1389:1398 | No text annotation | geometric HL_4V9F_037 HL_81545.2 | |
| HL_4WWW_170 | 1/YA/1449:1462 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_4WWW_171 | 1/YA/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_4WWW_172 | 1/YA/1533:1538 | No text annotation | ||
| HL_4WWW_173 | 1/YA/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_4WWW_218 | 1/YA/1612:1619 | No text annotation | homologous HL_7A0S_040 HL_89567.2 | |
| HL_4WWW_175 | 1/YA/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.8 | |
| HL_4WWW_176 | 1/YA/1691:1696 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_4WWW_177 | 1/YA/1728:1731 | No text annotation | homologous HL_5J7L_176 HL_32346.4 | |
| HL_4WWW_178 | 1/YA/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
| HL_4WWW_179 | 1/YA/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_4WWW_180 | 1/YA/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_4WWW_181 | 1/YA/1868:1873 | UNCG variation | geometric HL_2CZJ_007 NA | |
| HL_4WWW_182 | 1/YA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4WWW_183 | 1/YA/1949:1957 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_4WWW_219 | 1/YA/2027:2036 | No text annotation | homologous HL_5J7L_183 HL_61996.3 | |
| HL_4WWW_220 | 1/YA/2142:2149 | No text annotation | ||
| HL_4WWW_186 | 1/YA/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_4WWW_187 | 1/YA/2248:2256 | No text annotation | homologous HL_5J7L_186 HL_85367.2 | |
| HL_4WWW_188 | 1/YA/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_4WWW_221 | 1/YA/2304:2312 | No text annotation | ||
| HL_4WWW_190 | 1/YA/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_4WWW_191 | 1/YA/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.8 | |
| HL_4WWW_192 | 1/YA/2374:2379 | GNRA | homologous HL_7A0S_057 HL_37824.8 | |
| HL_4WWW_193 | 1/YA/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_4WWW_194 | 1/YA/2471:2479 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_4WWW_195 | 1/YA/2528:2535 | No text annotation | homologous HL_5J7L_194 HL_31585.4 | |
| HL_4WWW_196 | 1/YA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4WWW_197 | 1/YA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4WWW_198 | 1/YA/2658:2663 | GNRA | homologous HL_5J7L_197 HL_37824.8 | |
| HL_4WWW_199 | 1/YA/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_4WWW_200 | 1/YA/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_4WWW_222 | 1/YA/2796:2800 | No text annotation | ||
| HL_4WWW_202 | 1/YA/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_4WWW_203 | 1/YA/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.8 | |
| HL_4WWW_204 | 1/YB/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_4WWW_205 | 1/YB/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4WWW_206 | No text annotation | ||
| HL_4WWW_207 | tRNA D-loop | ||
| HL_4WWW_208 | No text annotation | ||
| HL_4WWW_057 | No text annotation | ||
| HL_4WWW_069 | No text annotation | ||
| HL_4WWW_083 | No text annotation | ||
| HL_4WWW_087 | No text annotation | ||
| HL_4WWW_108 | UNCG | ||
| HL_4WWW_211 | No text annotation | ||
| HL_4WWW_159 | No text annotation | ||
| HL_4WWW_216 | No text annotation | ||
| HL_4WWW_174 | No text annotation | ||
| HL_4WWW_184 | No text annotation | ||
| HL_4WWW_185 | No text annotation | ||
| HL_4WWW_189 | No text annotation | ||
| HL_4WWW_201 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4WWW_001 | 1/QA/30:32, 1/QA/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.14 | |
| IL_4WWW_002 | 1/QA/44:45, 1/QA/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.7 | |
| IL_4WWW_003 | 1/QA/47:52, 1/QA/359:361 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
| IL_4WWW_004 | 1/QA/54:56, 1/QA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_4WWW_005 | 1/QA/63:66, 1/QA/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.5 | |
| IL_4WWW_006 | 1/QA/67:69, 1/QA/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_4WWW_007 | 1/QA/70:73, 1/QA/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_4WWW_008 | 1/QA/75:76, 1/QA/93:95 | Single bulged G | homologous IL_5J7L_395 IL_00225.14 | |
| IL_4WWW_011 | 1/QA/128:131, 1/QA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_4WWW_012 | 1/QA/132:136, 1/QA/227:230 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
| IL_4WWW_013 | 1/QA/147:153, 1/QA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_4WWW_015 | 1/QA/203:206, 1/QA/213:214 | Minor groove platform | geometric IL_3RW6_003 IL_95583.2 | |
| IL_4WWW_016 | 1/QA/242:247, 1/QA/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_4WWW_017 | 1/QA/249:252, 1/QA/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_4WWW_018 | 1/QA/292:293, 1/QA/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_4WWW_019 | 1/QA/367:369, 1/QA/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_4WWW_020 | 1/QA/371:375, 1/QA/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_4WWW_021 | 1/QA/375:376, 1/QA/387:389 | Single bulged G | geometric IL_4LFB_016 IL_00225.14 | |
| IL_4WWW_022 | 1/QA/409:416, 1/QA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4WWW_023 | 1/QA/440:442, 1/QA/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_4WWW_024 | 1/QA/446:450, 1/QA/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
| IL_4WWW_025 | 1/QA/450:455, 1/QA/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4WWW_026 | 1/QA/458:459, 1/QA/472:474 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_4WWW_027 | 1/QA/460:462, 1/QA/470:471 | Single bulged A | geometric IL_5J7L_312 IL_31462.7 | |
| IL_4WWW_028 | 1/QA/504:511, 1/QA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_4WWW_029 | 1/QA/515:521, 1/QA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4WWW_030 | 1/QA/569:575, 1/QA/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_4WWW_031 | 1/QA/580:584, 1/QA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_4WWW_032 | 1/QA/594:596, 1/QA/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_4WWW_033 | 1/QA/597:598, 1/QA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_4WWW_035 | 1/QA/605:612, 1/QA/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_4WWW_036 | 1/QA/654:655, 1/QA/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_4WWW_037 | 1/QA/658:659, 1/QA/746:748 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_4WWW_038 | 1/QA/662:666, 1/QA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_4WWW_405 | 1/QA/673:677, 1/QA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_4WWW_376 | 1/QA/684:688, 1/QA/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_4WWW_041 | 1/QA/774:778, 1/QA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_4WWW_042 | 1/QA/779:783, 1/QA/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_4WWW_043 | 1/QA/887:894, 1/QA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_4WWW_044 | 1/QA/922:923, 1/QA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
| IL_4WWW_045 | 1/QA/925:927, 1/QA/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.14 | |
| IL_4WWW_406 | 1/QA/933:935, 1/QA/1380:1384 | Minor groove platform | geometric IL_4LFB_037 IL_47078.3 | |
| IL_4WWW_047 | 1/QA/953:954, 1/QA/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_4WWW_048 | 1/QA/993:997, 1/QA/1044:1045 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
| IL_4WWW_049 | 1/QA/998:999, 1/QA/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_4WWW_050 | 1/QA/1048:1050, 1/QA/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_4WWW_379 | 1/QA/1052:1056, 1/QA/1204:1206 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_4WWW_052 | 1/QA/1057:1058, 1/QA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_4WWW_053 | 1/QA/1060:1061, 1/QA/1195:1197 | Single bulged A | geometric IL_5J7L_049 IL_31462.7 | |
| IL_4WWW_054 | 1/QA/1061:1063, 1/QA/1193:1195 | Isolated non-canonical cWW pair | homologous IL_5J7L_050 IL_28037.2 | |
| IL_4WWW_380 | 1/QA/1124:1128, 1/QA/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_4WWW_056 | 1/QA/1129:1132, 1/QA/1142:1143 | Minor groove platform | geometric IL_5J7L_052 IL_15052.4 | |
| IL_4WWW_057 | 1/QA/1158:1161, 1/QA/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_4WWW_058 | 1/QA/1247:1253, 1/QA/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_4WWW_059 | 1/QA/1255:1258, 1/QA/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_4WWW_060 | 1/QA/1259:1263, 1/QA/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_4WWW_061 | 1/QA/1303:1308, 1/QA/1329:1334 | No text annotation | geometric IL_5J7L_057 IL_85536.2 | |
| IL_4WWW_062 | 1/QA/1399:1401, 1/QA/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_4WWW_063 | 1/QA/1401:1404, 1/QA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4WWW_064 | 1/QA/1405:1407, 1/QA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_4WWW_065 | 1/QA/1407:1409, 1/QA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4WWW_066 | 1/QA/1412:1414, 1/QA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4WWW_067 | 1/QA/1416:1419, 1/QA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4WWW_068 | 1/QA/1430:1435, 1/QA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_4WWW_069 | 1/QA/1440:1442, 1/QA/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.7 | |
| IL_4WWW_070 | 1/QA/1445:1448, 1/QA/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_4WWW_071 | 1/RA/24:30, 1/RA/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 IL_04021.2 | |
| IL_4WWW_072 | 1/RA/36:37, 1/RA/442:444 | Single bulged A | homologous IL_5J7L_246 IL_31462.7 | |
| IL_4WWW_073 | 1/RA/43:44, 1/RA/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_4WWW_074 | 1/RA/81:85, 1/RA/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_4WWW_076 | 1/RA/183:184, 1/RA/212:214 | Single stack bend | homologous IL_5J7L_249 IL_90729.1 | |
| IL_4WWW_077 | 1/RA/188:194, 1/RA/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 IL_04346.10 | |
| IL_4WWW_078 | 1/RA/239:245, 1/RA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_4WWW_079 | 1/RA/269:271, 1/RA/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_4WWW_080 | 1/RA/274:281, 1/RA/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4WWW_081 | 1/RA/293:295, 1/RA/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_4WWW_082 | 1/RA/481:484, 1/RA/496:509 | No text annotation | homologous IL_5J7L_255 IL_81516.2 | |
| IL_4WWW_083 | 1/RA/536:539, 1/RA/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_4WWW_084 | 1/RA/564:566, 1/RA/575:577 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_4WWW_085 | 1/RA/606:610, 1/RA/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_4WWW_086 | 1/RA/672:674, 1/RA/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_4WWW_087 | 1/RA/674:678, 1/RA/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 IL_54041.2 | |
| IL_4WWW_088 | 1/RA/697:698, 1/RA/763:765 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_4WWW_089 | 1/RA/702:703, 1/RA/728:730 | Single bulged G | geometric IL_5J7L_262 IL_00225.14 | |
| IL_4WWW_090 | 1/RA/703:707, 1/RA/724:728 | Triple sheared | homologous IL_5J7L_263 IL_50730.2 | |
| IL_4WWW_091 | 1/RA/738:740, 1/RA/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_4WWW_092 | 1/RA/775:777, 1/RA/787:791 | Multiple bulged bases | homologous IL_5J7L_265 IL_06549.2 | |
| IL_4WWW_093 | 1/RA/844:847, 1/RA/933:934 | Other IL | homologous IL_5J7L_267 IL_90729.1 | |
| IL_4WWW_382 | 1/RA/844:848, 1/RA/930:934 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_4WWW_094 | 1/RA/847:848, 1/RA/930:933 | Stack outside cWW | geometric IL_5J7L_268 IL_56987.1 | |
| IL_4WWW_095 | 1/RA/850:851, 1/RA/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_4WWW_096 | 1/RA/856:862, 1/RA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
| IL_4WWW_097 | 1/RA/862:863, 1/RA/913:915 | Single bulged G | homologous IL_5J7L_271 IL_00225.14 | |
| IL_4WWW_098 | 1/RA/864:868, 1/RA/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
| IL_4WWW_099 | 1/RA/870:872, 1/RA/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_4WWW_100 | 1/RA/875:879, 1/RA/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_4WWW_101 | 1/RA/880:881, 1/RA/895:897 | Single bulged A | homologous IL_7RQB_033 NA | |
| IL_4WWW_102 | 1/RA/994:996, 1/RA/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_4WWW_103 | 1/RA/998:1002, 1/RA/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4WWW_104 | 1/RA/1004:1011, 1/RA/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_4WWW_105 | 1/RA/1011:1013, 1/RA/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_4WWW_106 | 1/RA/1018:1024, 1/RA/1140:1144 | Kink-turn related | geometric IL_5J7L_280 IL_57188.5 | |
| IL_4WWW_107 | 1/RA/1024:1030, 1/RA/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_4WWW_108 | 1/RA/1031:1034, 1/RA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
| IL_4WWW_109 | 1/RA/1038:1041, 1/RA/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_4WWW_110 | 1/RA/1043:1051, 1/RA/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_4WWW_111 | 1/RA/1059:1062, 1/RA/1076:1079 | No text annotation | homologous IL_6PRV_001 IL_92446.2 | |
| IL_4WWW_112 | 1/RA/1087:1090, 1/RA/1101:1102 | No text annotation | homologous IL_6PRV_002 NA | |
| IL_4WWW_114 | 1/RA/1196:1198, 1/RA/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
| IL_4WWW_115 | 1/RA/1202:1206, 1/RA/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_4WWW_116 | 1/RA/1208:1215, 1/RA/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_4WWW_117 | 1/RA/1262:1269, 1/RA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_4WWW_118 | 1/RA/1310:1313, 1/RA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4WWW_119 | 1/RA/1319:1323, 1/RA/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_4WWW_120 | 1/RA/1351:1355, 1/RA/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_4WWW_121 | 1/RA/1357:1361, 1/RA/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_4WWW_122 | 1/RA/1414:1416, 1/RA/1582:1588 | No text annotation | ||
| IL_4WWW_123 | 1/RA/1417:1421, 1/RA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_4WWW_124 | 1/RA/1432:1435, 1/RA/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_4WWW_125 | 1/RA/1437:1440, 1/RA/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_4WWW_126 | 1/RA/1450:1451, 1/RA/1459:1461 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
| IL_4WWW_127 | 1/RA/1468:1471, 1/RA/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_4WWW_128 | 1/RA/1474:1478, 1/RA/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_4WWW_129 | 1/RA/1481:1482, 1/RA/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_4WWW_130 | 1/RA/1489:1491, 1/RA/1499:1500 | Single bulged A | geometric IL_5J7L_302 IL_31462.7 | |
| IL_4WWW_131 | 1/RA/1526:1529, 1/RA/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_4WWW_132 | 1/RA/1651:1656, 1/RA/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_4WWW_133 | 1/RA/1663:1665, 1/RA/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_4WWW_134 | 1/RA/1666:1669, 1/RA/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_4WWW_384 | 1/RA/1666:1674, 1/RA/1990:1994 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_4WWW_135 | 1/RA/1669:1674, 1/RA/1990:1993 | Intercalated tWH | geometric IL_5J7L_307 IL_76758.2 | |
| IL_4WWW_136 | 1/RA/1686:1691, 1/RA/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 IL_47346.2 | |
| IL_4WWW_137 | 1/RA/1712:1718, 1/RA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_4WWW_138 | 1/RA/1720:1724, 1/RA/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_4WWW_139 | 1/RA/1727:1728, 1/RA/1731:1733 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
| IL_4WWW_140 | 1/RA/1770:1771, 1/RA/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.7 | |
| IL_4WWW_141 | 1/RA/1798:1804, 1/RA/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_4WWW_142 | 1/RA/1837:1840, 1/RA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_4WWW_143 | 1/RA/1841:1842, 1/RA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
| IL_4WWW_144 | 1/RA/1846:1849, 1/RA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4WWW_385 | 1/RA/1851:1860, 1/RA/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_4WWW_145 | 1/RA/1864:1867, 1/RA/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_4WWW_146 | 1/RA/1933:1934, 1/RA/1964:1967 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_4WWW_147 | 1/RA/1934:1945, 1/RA/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_4WWW_148 | 1/RA/2050:2052, 1/RA/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_4WWW_149 | 1/RA/2054:2056, 1/RA/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_4WWW_150 | 1/RA/2067:2069, 1/RA/2442:2443 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_4WWW_151 | 1/RA/2070:2071, 1/RA/2438:2441 | Minor groove platform | homologous IL_5J7L_324 IL_51454.3 | |
| IL_4WWW_152 | 1/RA/2081:2083, 1/RA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_4WWW_153 | 1/RA/2085:2087, 1/RA/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_4WWW_154 | 1/RA/2103:2105, 1/RA/2184:2186 | Isolated cWH basepair | geometric IL_4WZM_001 NA | |
| IL_4WWW_158 | 1/RA/2202:2204, 1/RA/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_4WWW_159 | 1/RA/2350:2353, 1/RA/2364:2367 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_4WWW_160 | 1/RA/2401:2403, 1/RA/2414:2415 | No text annotation | ||
| IL_4WWW_161 | 1/RA/2453:2454, 1/RA/2498:2500 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
| IL_4WWW_162 | 1/RA/2454:2455, 1/RA/2496:2498 | Major groove platform | geometric IL_4WF9_090 IL_48076.6 | |
| IL_4WWW_163 | 1/RA/2457:2459, 1/RA/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
| IL_4WWW_164 | 1/RA/2459:2461, 1/RA/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7A0S_086 IL_51387.3 | |
| IL_4WWW_165 | 1/RA/2466:2470, 1/RA/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_4WWW_166 | 1/RA/2507:2508, 1/RA/2580:2582 | Major groove platform | homologous IL_4WF9_094 IL_07039.3 | |
| IL_4WWW_167 | 1/RA/2510:2512, 1/RA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 IL_07785.1 | |
| IL_4WWW_168 | 1/RA/2512:2513, 1/RA/2571:2574 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_4WWW_169 | 1/RA/2522:2523, 1/RA/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_4WWW_171 | 1/RA/2591:2592, 1/RA/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.7 | |
| IL_4WWW_172 | 1/RA/2636:2640, 1/RA/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_4WWW_173 | 1/RA/2652:2658, 1/RA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 IL_16458.4 | |
| IL_4WWW_174 | 1/RA/2680:2684, 1/RA/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_4WWW_175 | 1/RA/2687:2691, 1/RA/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_4WWW_176 | 1/RA/2695:2696, 1/RA/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_4WWW_177 | 1/RA/2737:2742, 1/RA/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_4WWW_178 | 1/RA/2795:2796, 1/RA/2799:2801 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_4WWW_179 | 1/RA/2806:2811, 1/RA/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_4WWW_180 | 1/RA/2838:2839, 1/RA/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_4WWW_181 | 1/RA/2843:2846, 1/RA/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_4WWW_182 | 1/RA/2847:2852, 1/RA/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_4WWW_183 | 1/RB/17:18, 1/RB/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.7 | |
| IL_4WWW_184 | 1/RB/23:28, 1/RB/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_4WWW_185 | 1/RB/30:31, 1/RB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_4WWW_186 | 1/RB/34:38, 1/RB/44:48 | Symmetric double minor groove platform | homologous IL_5J7L_358 IL_58103.11 | |
| IL_4WWW_187 | 1/RB/71:79, 1/RB/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 | |
| IL_4WWW_188 | 1/XA/30:32, 1/XA/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.14 | |
| IL_4WWW_189 | 1/XA/44:45, 1/XA/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.7 | |
| IL_4WWW_190 | 1/XA/47:52, 1/XA/359:361 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
| IL_4WWW_191 | 1/XA/54:56, 1/XA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_4WWW_192 | 1/XA/63:66, 1/XA/103:104 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_4WWW_193 | 1/XA/67:69, 1/XA/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_4WWW_194 | 1/XA/70:73, 1/XA/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_4WWW_195 | 1/XA/75:76, 1/XA/93:95 | Single bulged G | homologous IL_5J7L_395 IL_00225.14 | |
| IL_4WWW_196 | 1/XA/79:83, 1/XA/86:90 | No text annotation | ||
| IL_4WWW_197 | 1/XA/128:131, 1/XA/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_4WWW_198 | 1/XA/132:136, 1/XA/227:230 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
| IL_4WWW_199 | 1/XA/144:146, 1/XA/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_4WWW_200 | 1/XA/147:153, 1/XA/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_4WWW_201 | 1/XA/203:206, 1/XA/213:214 | No text annotation | ||
| IL_4WWW_202 | 1/XA/242:247, 1/XA/277:284 | Kink-turn with non-sequential stacking | geometric IL_5J7L_014 IL_46174.3 | |
| IL_4WWW_203 | 1/XA/249:252, 1/XA/274:275 | No text annotation | homologous IL_5J7L_015 IL_47074.2 | |
| IL_4WWW_204 | 1/XA/292:293, 1/XA/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_4WWW_205 | 1/XA/367:369, 1/XA/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_4WWW_206 | 1/XA/371:375, 1/XA/389:390 | C-loop | homologous IL_4LFB_015 IL_03109.3 | |
| IL_4WWW_207 | 1/XA/375:376, 1/XA/387:389 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_4WWW_208 | 1/XA/409:416, 1/XA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4WWW_209 | 1/XA/440:442, 1/XA/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_4WWW_210 | 1/XA/446:450, 1/XA/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
| IL_4WWW_211 | 1/XA/450:454, 1/XA/479:483 | No text annotation | ||
| IL_4WWW_387 | 1/XA/450:455, 1/XA/477:483 | No text annotation | homologous IL_5J7L_023 IL_70801.1 | |
| IL_4WWW_212 | 1/XA/454:455, 1/XA/477:479 | Single stack bend | geometric IL_5J7L_044 IL_26793.1 | |
| IL_4WWW_214 | 1/XA/458:459, 1/XA/472:474 | Single stack bend with bulge | geometric IL_8P9A_328 IL_90729.1 | |
| IL_4WWW_215 | 1/XA/460:462, 1/XA/470:471 | Single bulged A | geometric IL_4V9F_002 IL_31462.7 | |
| IL_4WWW_216 | 1/XA/504:511, 1/XA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_4WWW_217 | 1/XA/515:521, 1/XA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4WWW_218 | 1/XA/569:575, 1/XA/880:881 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_4WWW_219 | 1/XA/580:584, 1/XA/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_4WWW_220 | 1/XA/594:596, 1/XA/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_4WWW_221 | 1/XA/597:598, 1/XA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_4WWW_222 | 1/XA/605:612, 1/XA/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_4WWW_223 | 1/XA/654:655, 1/XA/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_4WWW_224 | 1/XA/658:659, 1/XA/746:748 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_4WWW_225 | 1/XA/662:666, 1/XA/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_4WWW_389 | 1/XA/673:677, 1/XA/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_4WWW_390 | 1/XA/684:688, 1/XA/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_4WWW_228 | 1/XA/774:778, 1/XA/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_4WWW_229 | 1/XA/779:783, 1/XA/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_4WWW_230 | 1/XA/887:894, 1/XA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_4WWW_231 | 1/XA/922:923, 1/XA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
| IL_4WWW_232 | 1/XA/925:927, 1/XA/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.14 | |
| IL_4WWW_233 | 1/XA/933:936, 1/XA/1379:1384 | No text annotation | geometric IL_6CZR_149 NA | |
| IL_4WWW_392 | 1/XA/953:954, 1/XA/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_4WWW_235 | 1/XA/993:997, 1/XA/1044:1045 | Minor groove platform | homologous IL_4LFB_039 IL_47078.3 | |
| IL_4WWW_236 | 1/XA/998:999, 1/XA/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_4WWW_407 | 1/XA/1048:1050, 1/XA/1208:1209 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_4WWW_393 | 1/XA/1052:1055, 1/XA/1205:1206 | Multiple bulged bases | geometric IL_1FUF_002 IL_82107.5 | |
| IL_4WWW_239 | 1/XA/1057:1058, 1/XA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_4WWW_240 | 1/XA/1060:1061, 1/XA/1195:1197 | Single bulged A | homologous IL_5J7L_049 IL_31462.7 | |
| IL_4WWW_241 | 1/XA/1061:1063, 1/XA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_4WWW_242 | 1/XA/1124:1128, 1/XA/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_4WWW_243 | 1/XA/1129:1132, 1/XA/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_4WWW_244 | 1/XA/1158:1161, 1/XA/1175:1181 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
| IL_4WWW_246 | 1/XA/1247:1253, 1/XA/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_4WWW_247 | 1/XA/1255:1258, 1/XA/1277:1282 | 180 degree turn | homologous IL_5J7L_055 IL_11344.2 | |
| IL_4WWW_248 | 1/XA/1259:1263, 1/XA/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_4WWW_249 | 1/XA/1303:1308, 1/XA/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_4WWW_250 | 1/XA/1399:1401, 1/XA/1501:1504 | No text annotation | geometric IL_5J7L_058 IL_61438.4 | |
| IL_4WWW_251 | 1/XA/1401:1404, 1/XA/1497:1501 | No text annotation | homologous IL_5J7L_059 IL_65718.4 | |
| IL_4WWW_252 | 1/XA/1405:1407, 1/XA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_4WWW_253 | 1/XA/1407:1409, 1/XA/1491:1494 | Decoding loop related | geometric IL_2O3X_003 IL_31737.3 | |
| IL_4WWW_254 | 1/XA/1412:1414, 1/XA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4WWW_255 | 1/XA/1416:1419, 1/XA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4WWW_256 | 1/XA/1430:1435, 1/XA/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_4WWW_257 | 1/XA/1440:1442, 1/XA/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.7 | |
| IL_4WWW_258 | 1/XA/1445:1448, 1/XA/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_4WWW_260 | 1/YA/24:30, 1/YA/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 IL_04021.2 | |
| IL_4WWW_261 | 1/YA/36:37, 1/YA/442:444 | Single bulged A | geometric IL_1NBS_005 IL_31462.7 | |
| IL_4WWW_408 | 1/YA/43:44, 1/YA/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_4WWW_409 | 1/YA/81:85, 1/YA/97:105 | No text annotation | ||
| IL_4WWW_265 | 1/YA/183:184, 1/YA/212:214 | Single stack bend | homologous IL_5J7L_249 IL_90729.1 | |
| IL_4WWW_266 | 1/YA/188:194, 1/YA/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 IL_04346.10 | |
| IL_4WWW_267 | 1/YA/239:245, 1/YA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_4WWW_269 | 1/YA/274:281, 1/YA/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_4WWW_270 | 1/YA/293:295, 1/YA/343:347 | No text annotation | homologous IL_4WF9_014 IL_69440.3 | |
| IL_4WWW_272 | 1/YA/481:484, 1/YA/496:509 | No text annotation | homologous IL_5J7L_255 IL_81516.2 | |
| IL_4WWW_273 | 1/YA/536:539, 1/YA/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_4WWW_274 | 1/YA/564:566, 1/YA/575:577 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_4WWW_276 | 1/YA/606:610, 1/YA/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_4WWW_277 | 1/YA/672:674, 1/YA/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 IL_87907.2 | |
| IL_4WWW_278 | 1/YA/674:678, 1/YA/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 IL_54041.2 | |
| IL_4WWW_279 | 1/YA/697:698, 1/YA/763:765 | Single bulged A | homologous IL_4WF9_022 IL_31462.7 | |
| IL_4WWW_280 | 1/YA/702:703, 1/YA/728:730 | Single bulged G | homologous IL_4WF9_023 IL_00225.14 | |
| IL_4WWW_281 | 1/YA/703:707, 1/YA/724:728 | Triple sheared | geometric IL_4WF9_024 IL_50730.2 | |
| IL_4WWW_282 | 1/YA/738:740, 1/YA/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_4WWW_283 | 1/YA/775:777, 1/YA/787:791 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_4WWW_284 | 1/YA/844:848, 1/YA/930:934 | No text annotation | ||
| IL_4WWW_285 | 1/YA/850:851, 1/YA/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_4WWW_286 | 1/YA/856:862, 1/YA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
| IL_4WWW_287 | 1/YA/862:863, 1/YA/913:915 | Single bulged G | geometric IL_5J7L_271 IL_00225.14 | |
| IL_4WWW_288 | 1/YA/864:868, 1/YA/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
| IL_4WWW_289 | 1/YA/870:872, 1/YA/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_4WWW_290 | 1/YA/994:996, 1/YA/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_4WWW_291 | 1/YA/998:1002, 1/YA/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
| IL_4WWW_292 | 1/YA/1004:1011, 1/YA/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_4WWW_293 | 1/YA/1011:1013, 1/YA/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_4WWW_294 | 1/YA/1018:1024, 1/YA/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_4WWW_295 | 1/YA/1024:1030, 1/YA/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_4WWW_296 | 1/YA/1031:1034, 1/YA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_57744.1 | |
| IL_4WWW_297 | 1/YA/1038:1041, 1/YA/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_4WWW_298 | 1/YA/1043:1051, 1/YA/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_4WWW_299 | 1/YA/1059:1063, 1/YA/1075:1079 | No text annotation | ||
| IL_4WWW_300 | 1/YA/1087:1090, 1/YA/1101:1102 | No text annotation | homologous IL_6PRV_002 NA | |
| IL_4WWW_302 | 1/YA/1196:1198, 1/YA/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4WWW_303 | 1/YA/1202:1206, 1/YA/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_4WWW_304 | 1/YA/1208:1215, 1/YA/1234:1238 | Kink-turn | homologous IL_7A0S_043 IL_70923.9 | |
| IL_4WWW_305 | 1/YA/1262:1269, 1/YA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_4WWW_307 | 1/YA/1310:1313, 1/YA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4WWW_308 | 1/YA/1319:1323, 1/YA/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_4WWW_309 | 1/YA/1351:1355, 1/YA/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_4WWW_310 | 1/YA/1357:1361, 1/YA/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_4WWW_399 | 1/YA/1415:1416, 1/YA/1582:1587 | No text annotation | ||
| IL_4WWW_314 | 1/YA/1417:1421, 1/YA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_4WWW_315 | 1/YA/1432:1435, 1/YA/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_4WWW_316 | 1/YA/1437:1440, 1/YA/1551:1555 | tSH-tHW | homologous IL_7A0S_053 IL_99646.2 | |
| IL_4WWW_317 | 1/YA/1468:1471, 1/YA/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_4WWW_318 | 1/YA/1474:1478, 1/YA/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_4WWW_410 | 1/YA/1481:1482, 1/YA/1507:1510 | No text annotation | ||
| IL_4WWW_320 | 1/YA/1489:1491, 1/YA/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.7 | |
| IL_4WWW_321 | 1/YA/1651:1656, 1/YA/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_4WWW_322 | 1/YA/1663:1665, 1/YA/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_4WWW_323 | 1/YA/1666:1669, 1/YA/1993:1994 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 IL_50694.7 | |
| IL_4WWW_400 | 1/YA/1666:1674, 1/YA/1990:1994 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_4WWW_324 | 1/YA/1669:1674, 1/YA/1990:1993 | Intercalated tWH | homologous IL_5J7L_307 IL_76758.2 | |
| IL_4WWW_325 | 1/YA/1686:1691, 1/YA/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_4WWW_326 | 1/YA/1712:1718, 1/YA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_4WWW_327 | 1/YA/1720:1724, 1/YA/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_4WWW_328 | 1/YA/1727:1728, 1/YA/1731:1733 | Single bulged C | homologous IL_5J7L_311 IL_61258.15 | |
| IL_4WWW_329 | 1/YA/1770:1771, 1/YA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4WWW_330 | 1/YA/1798:1804, 1/YA/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_4WWW_331 | 1/YA/1837:1840, 1/YA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_4WWW_332 | 1/YA/1841:1842, 1/YA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
| IL_4WWW_333 | 1/YA/1846:1849, 1/YA/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.4 | |
| IL_4WWW_402 | 1/YA/1851:1860, 1/YA/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_4WWW_334 | 1/YA/1864:1867, 1/YA/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_4WWW_335 | 1/YA/1933:1934, 1/YA/1964:1967 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_4WWW_336 | 1/YA/1934:1945, 1/YA/1961:1964 | No text annotation | geometric IL_4V9F_071 IL_04332.3 | |
| IL_4WWW_337 | 1/YA/2050:2052, 1/YA/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_4WWW_338 | 1/YA/2054:2056, 1/YA/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_4WWW_340 | 1/YA/2067:2069, 1/YA/2442:2443 | Single bulged U | geometric IL_4WF9_080 IL_89505.4 | |
| IL_4WWW_341 | 1/YA/2070:2071, 1/YA/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_4WWW_342 | 1/YA/2081:2083, 1/YA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_4WWW_343 | 1/YA/2085:2087, 1/YA/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_4WWW_411 | 1/YA/2102:2105, 1/YA/2184:2187 | No text annotation | ||
| IL_4WWW_345 | 1/YA/2108:2110, 1/YA/2179:2181 | No text annotation | ||
| IL_4WWW_346 | 1/YA/2202:2204, 1/YA/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_4WWW_347 | 1/YA/2350:2353, 1/YA/2364:2367 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_4WWW_348 | 1/YA/2401:2403, 1/YA/2414:2415 | Single bulged U | geometric IL_8P9A_403 IL_89505.4 | |
| IL_4WWW_349 | 1/YA/2453:2454, 1/YA/2498:2500 | Single stack bend | geometric IL_4WF9_089 IL_26793.1 | |
| IL_4WWW_350 | 1/YA/2454:2455, 1/YA/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4WWW_351 | 1/YA/2457:2459, 1/YA/2493:2494 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_4WWW_403 | 1/YA/2459:2461, 1/YA/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_5J7L_337 IL_51387.3 | |
| IL_4WWW_353 | 1/YA/2466:2470, 1/YA/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_4WWW_354 | 1/YA/2507:2508, 1/YA/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_4WWW_355 | 1/YA/2510:2512, 1/YA/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 IL_07785.1 | |
| IL_4WWW_356 | 1/YA/2512:2513, 1/YA/2571:2574 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_4WWW_357 | 1/YA/2522:2523, 1/YA/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_4WWW_358 | 1/YA/2591:2592, 1/YA/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.7 | |
| IL_4WWW_359 | 1/YA/2636:2640, 1/YA/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_4WWW_360 | 1/YA/2652:2658, 1/YA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 IL_16458.4 | |
| IL_4WWW_361 | 1/YA/2680:2684, 1/YA/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_4WWW_362 | 1/YA/2687:2691, 1/YA/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_4WWW_363 | 1/YA/2695:2696, 1/YA/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_4WWW_364 | 1/YA/2737:2742, 1/YA/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_4WWW_365 | 1/YA/2806:2811, 1/YA/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_4WWW_366 | 1/YA/2838:2839, 1/YA/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_4WWW_367 | 1/YA/2843:2846, 1/YA/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_4WWW_368 | 1/YA/2847:2852, 1/YA/2865:2869 | No text annotation | homologous IL_7A0S_101 IL_70411.2 | |
| IL_4WWW_412 | 1/YB/17:18, 1/YB/65:67 | Major groove intercalation | geometric IL_5J7L_355 IL_31462.7 | |
| IL_4WWW_369 | 1/YB/23:28, 1/YB/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_4WWW_413 | 1/YB/30:31, 1/YB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_4WWW_371 | 1/YB/34:38, 1/YB/44:48 | Symmetric double minor groove platform | geometric IL_5J7L_358 IL_58103.11 | |
| IL_4WWW_372 | 1/YB/71:79, 1/YB/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4WWW_009 | No text annotation | ||
| IL_4WWW_010 | No text annotation | ||
| IL_4WWW_014 | Isolated non-canonical cWW pair | ||
| IL_4WWW_373 | No text annotation | ||
| IL_4WWW_374 | No text annotation | ||
| IL_4WWW_034 | Isolated non-canonical cWW pair | ||
| IL_4WWW_375 | No text annotation | ||
| IL_4WWW_039 | No text annotation | ||
| IL_4WWW_040 | Kink-turn | ||
| IL_4WWW_377 | Isolated non-canonical cWW pair | ||
| IL_4WWW_046 | No text annotation | ||
| IL_4WWW_378 | Isolated non-canonical cWW pair | ||
| IL_4WWW_051 | Tandem non-canonical cWW pairs | ||
| IL_4WWW_055 | No text annotation | ||
| IL_4WWW_075 | No text annotation | ||
| IL_4WWW_381 | No text annotation | ||
| IL_4WWW_383 | No text annotation | ||
| IL_4WWW_113 | No text annotation | ||
| IL_4WWW_155 | Isolated non-canonical cWW pair | ||
| IL_4WWW_156 | No text annotation | ||
| IL_4WWW_157 | Isolated cWS basepair | ||
| IL_4WWW_170 | Isolated non-canonical cWW pair | ||
| IL_4WWW_386 | No text annotation | ||
| IL_4WWW_213 | Isolated non-canonical cWW pair | ||
| IL_4WWW_388 | No text annotation | ||
| IL_4WWW_226 | No text annotation | ||
| IL_4WWW_227 | Kink-turn | ||
| IL_4WWW_391 | No text annotation | ||
| IL_4WWW_234 | Isolated non-canonical cWW with bulges | ||
| IL_4WWW_237 | Isolated non-canonical cWW pair | ||
| IL_4WWW_238 | Isolated cWS basepair | ||
| IL_4WWW_245 | Isolated non-canonical cWW pair | ||
| IL_4WWW_259 | Isolated non-canonical cWW pair | ||
| IL_4WWW_394 | Isolated non-canonical cWW pair | ||
| IL_4WWW_262 | No text annotation | ||
| IL_4WWW_395 | No text annotation | ||
| IL_4WWW_263 | Major groove platform with extra cWW | ||
| IL_4WWW_264 | No text annotation | ||
| IL_4WWW_396 | No text annotation | ||
| IL_4WWW_268 | Isolated non-canonical cWW pair | ||
| IL_4WWW_271 | Decoding loop related | ||
| IL_4WWW_275 | No text annotation | ||
| IL_4WWW_397 | Tandem non-canonical cWW pairs | ||
| IL_4WWW_301 | No text annotation | ||
| IL_4WWW_398 | No text annotation | ||
| IL_4WWW_306 | Isolated non-canonical cWW pair | ||
| IL_4WWW_311 | Tandem non-canonical cWW pairs | ||
| IL_4WWW_312 | No text annotation | ||
| IL_4WWW_313 | No text annotation | ||
| IL_4WWW_319 | No text annotation | ||
| IL_4WWW_401 | No text annotation | ||
| IL_4WWW_339 | Isolated non-canonical cWW pair | ||
| IL_4WWW_344 | No text annotation | ||
| IL_4WWW_352 | No text annotation | ||
| IL_4WWW_404 | Isolated non-canonical cWW pair | ||
| IL_4WWW_370 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4WWW_039 | 1/QA/46:47, 1/QA/361:367, 1/QA/393:395 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_4WWW_040 | 1/QA/46:52, 1/QA/359:367, 1/QA/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_4WWW_041 | 1/QA/586:588, 1/QA/651:654, 1/QA/754:755 | No text annotation | geometric J3_5J7L_002 J3_56052.5 | |
| J3_4WWW_042 | 1/QA/586:588, 1/QA/651:655, 1/QA/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_4WWW_043 | 1/QA/672:673, 1/QA/717:725, 1/QA/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_4WWW_001 | 1/QA/826:829, 1/QA/857:861, 1/QA/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_4WWW_002 | 1/QA/936:939, 1/QA/1344:1350, 1/QA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4WWW_003 | 1/QA/943:946, 1/QA/1235:1237, 1/QA/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_4WWW_004 | 1/QA/955:962, 1/QA/973:984, 1/QA/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_4WWW_005 | 1/QA/990:993, 1/QA/1045:1047, 1/QA/1210:1215 | No text annotation | homologous J3_5J7L_007 J3_82572.1 | |
| J3_4WWW_045 | 1/QA/990:997, 1/QA/1044:1047, 1/QA/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_4WWW_006 | 1/QA/1003:1006, 1/QA/1023:1027, 1/QA/1034:1037 | No text annotation | ||
| J3_4WWW_046 | 1/QA/1003:1006, 1/QA/1023:1028, 1/QA/1033:1037 | No text annotation | ||
| J3_4WWW_007 | 1/QA/1063:1068, 1/QA/1107:1113, 1/QA/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_4WWW_047 | 1/QA/1073:1074, 1/QA/1083:1087, 1/QA/1098:1102 | No text annotation | homologous J3_5J7L_009 J3_76043.3 | |
| J3_4WWW_008 | 1/QA/1116:1118, 1/QA/1155:1158, 1/QA/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_4WWW_048 | 1/QA/1116:1118, 1/QA/1155:1161, 1/QA/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_4WWW_009 | 1/QA/1237:1241, 1/QA/1296:1303, 1/QA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4WWW_049 | 1/QA/1237:1241, 1/QA/1296:1308, 1/QA/1329:1337 | No text annotation | ||
| J3_4WWW_050 | 1/RA/30:31, 1/RA/474:481, 1/RA/509:510 | No text annotation | geometric J3_5J7L_036 J3_60031.2 | |
| J3_4WWW_051 | 1/RA/30:31, 1/RA/474:484, 1/RA/496:510 | No text annotation | homologous J3_5J7L_066 J3_92134.2 | |
| J3_4WWW_052 | 1/RA/32:35, 1/RA/445:461, 1/RA/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_4WWW_053 | 1/RA/56:57, 1/RA/70:76, 1/RA/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_4WWW_054 | 1/RA/297:301, 1/RA/316:325, 1/RA/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_4WWW_010 | 1/RA/683:689, 1/RA/773:775, 1/RA/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_4WWW_011 | 1/RA/698:700, 1/RA/732:736, 1/RA/760:763 | No text annotation | homologous J3_5J7L_039 J3_44724.7 | |
| J3_4WWW_012 | 1/RA/1055:1057, 1/RA/1081:1087, 1/RA/1102:1104 | No text annotation | homologous J3_5J7L_040 J3_28621.5 | |
| J3_4WWW_013 | 1/RA/1298:1303, 1/RA/1625:1627, 1/RA/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_4WWW_014 | 1/RA/1306:1309, 1/RA/1605:1611, 1/RA/1620:1622 | No text annotation | homologous J3_5J7L_042 J3_19545.2 | |
| J3_4WWW_055 | 1/RA/1344:1349, 1/RA/1382:1385, 1/RA/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_4WWW_056 | 1/RA/1424:1429, 1/RA/1564:1565, 1/RA/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_4WWW_015 | 1/RA/2091:2093, 1/RA/2196:2200, 1/RA/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_4WWW_057 | 1/RA/2282:2284, 1/RA/2384:2395, 1/RA/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_4WWW_016 | 1/RA/2295:2299, 1/RA/2317:2323, 1/RA/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_4WWW_017 | 1/RA/2517:2520, 1/RA/2545:2547, 1/RA/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_4WWW_058 | 1/RA/2789:2791, 1/RA/2805:2806, 1/RA/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_4WWW_018 | 1/RA/2812:2815, 1/RA/2831:2836, 1/RA/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_4WWW_019 | 1/RB/10:16, 1/RB/68:70, 1/RB/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J3_4WWW_059 | 1/XA/46:47, 1/XA/361:367, 1/XA/393:395 | No text annotation | geometric J3_5J7L_001 J3_67856.4 | |
| J3_4WWW_060 | 1/XA/46:52, 1/XA/359:367, 1/XA/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_4WWW_061 | 1/XA/586:588, 1/XA/651:654, 1/XA/754:755 | No text annotation | geometric J3_5J7L_002 J3_56052.5 | |
| J3_4WWW_062 | 1/XA/586:588, 1/XA/651:655, 1/XA/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_4WWW_063 | 1/XA/672:673, 1/XA/717:725, 1/XA/732:734 | No text annotation | homologous J3_4LFB_012 J3_11934.4 | |
| J3_4WWW_020 | 1/XA/826:829, 1/XA/857:861, 1/XA/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_4WWW_021 | 1/XA/936:939, 1/XA/1344:1350, 1/XA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4WWW_022 | 1/XA/943:946, 1/XA/1235:1237, 1/XA/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_4WWW_078 | 1/XA/955:962, 1/XA/973:984, 1/XA/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_4WWW_024 | 1/XA/990:993, 1/XA/1045:1047, 1/XA/1210:1215 | No text annotation | homologous J3_5J7L_007 J3_82572.1 | |
| J3_4WWW_064 | 1/XA/990:997, 1/XA/1044:1047, 1/XA/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_4WWW_025 | 1/XA/1003:1006, 1/XA/1023:1027, 1/XA/1034:1037 | No text annotation | ||
| J3_4WWW_026 | 1/XA/1063:1068, 1/XA/1107:1113, 1/XA/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_4WWW_065 | 1/XA/1073:1074, 1/XA/1083:1087, 1/XA/1098:1102 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_4WWW_027 | 1/XA/1116:1118, 1/XA/1155:1158, 1/XA/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_4WWW_066 | 1/XA/1116:1118, 1/XA/1155:1161, 1/XA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4WWW_028 | 1/XA/1237:1241, 1/XA/1296:1303, 1/XA/1334:1337 | No text annotation | homologous J3_5J7L_011 J3_37047.6 | |
| J3_4WWW_068 | 1/YA/30:31, 1/YA/474:481, 1/YA/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4WWW_069 | 1/YA/30:31, 1/YA/474:484, 1/YA/496:510 | No text annotation | homologous J3_5J7L_066 J3_92134.2 | |
| J3_4WWW_070 | 1/YA/32:35, 1/YA/445:461, 1/YA/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_4WWW_079 | 1/YA/56:57, 1/YA/70:76, 1/YA/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_4WWW_029 | 1/YA/683:689, 1/YA/773:775, 1/YA/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_4WWW_030 | 1/YA/698:700, 1/YA/732:736, 1/YA/760:763 | No text annotation | homologous J3_5J7L_039 J3_44724.7 | |
| J3_4WWW_031 | 1/YA/1055:1057, 1/YA/1081:1087, 1/YA/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_28621.5 | |
| J3_4WWW_032 | 1/YA/1298:1303, 1/YA/1625:1627, 1/YA/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_4WWW_033 | 1/YA/1306:1309, 1/YA/1605:1611, 1/YA/1620:1622 | No text annotation | homologous J3_5J7L_042 J3_19545.2 | |
| J3_4WWW_080 | 1/YA/1344:1350, 1/YA/1381:1385, 1/YA/1402:1403 | No text annotation | ||
| J3_4WWW_073 | 1/YA/1424:1429, 1/YA/1564:1565, 1/YA/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_4WWW_034 | 1/YA/2091:2093, 1/YA/2196:2200, 1/YA/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_4WWW_075 | 1/YA/2282:2284, 1/YA/2384:2395, 1/YA/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_4WWW_081 | 1/YA/2295:2299, 1/YA/2317:2323, 1/YA/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_4WWW_036 | 1/YA/2517:2520, 1/YA/2545:2547, 1/YA/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_4WWW_076 | 1/YA/2789:2791, 1/YA/2805:2806, 1/YA/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_4WWW_037 | 1/YA/2812:2815, 1/YA/2831:2836, 1/YA/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_4WWW_077 | 1/YB/10:16, 1/YB/68:70, 1/YB/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J4_4WWW_001 | 1/QA/115:122, 1/QA/239:240, 1/QA/286:289, 1/QA/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_4WWW_002 | 1/QA/142:146, 1/QA/176:184, 1/QA/193:198, 1/QA/219:221 | No text annotation | ||
| J4_4WWW_003 | 1/QA/575:577, 1/QA/764:769, 1/QA/810:821, 1/QA/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J4_4WWW_004 | 1/RA/268:269, 1/RA/370:375, 1/RA/399:406, 1/RA/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_4WWW_005 | 1/RA/297:301, 1/RA/316:319, 1/RA/323:325, 1/RA/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_4WWW_006 | 1/RA/601:604, 1/RA/624:628, 1/RA/635:638, 1/RA/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_4WWW_007 | 1/RA/1270:1276, 1/RA/1294:1295, 1/RA/1645:1648, 1/RA/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_4WWW_008 | 1/RA/1310:1314, 1/RA/1338:1343, 1/RA/1404:1405, 1/RA/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_4WWW_009 | 1/RA/1313:1314, 1/RA/1338:1343, 1/RA/1404:1405, 1/RA/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_4WWW_010 | 1/RA/1444:1445, 1/RA/1466:1467, 1/RA/1525:1526, 1/RA/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_4WWW_011 | 1/RA/1772:1776, 1/RA/1788:1792, 1/RA/1827:1830, 1/RA/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4WWW_012 | 1/RA/1833:1835, 1/RA/1905:1906, 1/RA/1924:1933, 1/RA/1967:1972 | No text annotation | homologous J4_5J7L_026 J4_93343.1 | |
| J4_4WWW_013 | 1/RA/2285:2289, 1/RA/2343:2347, 1/RA/2370:2372, 1/RA/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_4WWW_014 | 1/RA/2643:2646, 1/RA/2674:2676, 1/RA/2731:2735, 1/RA/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J4_4WWW_015 | 1/XA/115:122, 1/XA/239:240, 1/XA/286:289, 1/XA/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4WWW_029 | 1/XA/142:144, 1/XA/178:184, 1/XA/193:198, 1/XA/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_4WWW_017 | 1/XA/575:577, 1/XA/764:769, 1/XA/810:821, 1/XA/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J4_4WWW_030 | 1/YA/268:271, 1/YA/366:375, 1/YA/399:406, 1/YA/421:424 | No text annotation | ||
| J4_4WWW_019 | 1/YA/297:303, 1/YA/314:319, 1/YA/323:325, 1/YA/337:341 | No text annotation | ||
| J4_4WWW_020 | 1/YA/601:604, 1/YA/624:628, 1/YA/635:638, 1/YA/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_4WWW_031 | 1/YA/1270:1276, 1/YA/1294:1295, 1/YA/1645:1648, 1/YA/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_4WWW_022 | 1/YA/1310:1314, 1/YA/1338:1343, 1/YA/1404:1405, 1/YA/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_4WWW_023 | 1/YA/1313:1314, 1/YA/1338:1343, 1/YA/1404:1405, 1/YA/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_4WWW_024 | 1/YA/1444:1445, 1/YA/1466:1467, 1/YA/1525:1529, 1/YA/1542:1547 | No text annotation | homologous J4_7A0S_007 J4_91813.1 | |
| J4_4WWW_025 | 1/YA/1772:1776, 1/YA/1788:1792, 1/YA/1827:1830, 1/YA/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4WWW_026 | 1/YA/1833:1835, 1/YA/1905:1906, 1/YA/1924:1933, 1/YA/1967:1972 | No text annotation | homologous J4_5J7L_026 J4_93343.1 | |
| J4_4WWW_027 | 1/YA/2285:2289, 1/YA/2343:2347, 1/YA/2370:2372, 1/YA/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_4WWW_028 | 1/YA/2643:2646, 1/YA/2674:2676, 1/YA/2731:2735, 1/YA/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J5_4WWW_001 | 1/QA/36:39, 1/QA/403:406, 1/QA/436:440, 1/QA/497:500, 1/QA/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_4WWW_002 | 1/QA/36:39, 1/QA/403:406, 1/QA/436:442, 1/QA/492:500, 1/QA/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_4WWW_003 | 1/QA/58:61, 1/QA/106:113, 1/QA/314:316, 1/QA/337:339, 1/QA/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_4WWW_004 | 1/RA/47:54, 1/RA/116:121, 1/RA/130:131, 1/RA/148:150, 1/RA/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_4WWW_005 | 1/RA/531:533, 1/RA/560:564, 1/RA/577:579, 1/RA/1261:1262, 1/RA/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_4WWW_006 | 1/RA/584:589, 1/RA/668:671, 1/RA/809:812, 1/RA/1195:1196, 1/RA/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_4WWW_007 | 1/RA/1674:1682, 1/RA/1706:1707, 1/RA/1751:1752, 1/RA/1756:1764, 1/RA/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_4WWW_008 | 1/RA/2057:2064, 1/RA/2446:2453, 1/RA/2500:2506, 1/RA/2583:2588, 1/RA/2606:2611 | No text annotation | ||
| J5_4WWW_009 | 1/RA/2074:2077, 1/RA/2243:2246, 1/RA/2258:2259, 1/RA/2281:2282, 1/RA/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J5_4WWW_010 | 1/XA/36:39, 1/XA/403:406, 1/XA/436:440, 1/XA/497:500, 1/XA/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_4WWW_011 | 1/XA/36:39, 1/XA/403:406, 1/XA/436:442, 1/XA/492:500, 1/XA/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_4WWW_012 | 1/XA/58:61, 1/XA/106:113, 1/XA/314:316, 1/XA/337:339, 1/XA/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_4WWW_020 | 1/YA/47:54, 1/YA/116:121, 1/YA/130:131, 1/YA/148:150, 1/YA/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_4WWW_014 | 1/YA/531:533, 1/YA/560:566, 1/YA/575:579, 1/YA/1261:1262, 1/YA/2017:2018 | No text annotation | ||
| J5_4WWW_021 | 1/YA/584:589, 1/YA/668:671, 1/YA/809:812, 1/YA/1195:1196, 1/YA/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_4WWW_016 | 1/YA/1310:1314, 1/YA/1338:1350, 1/YA/1381:1385, 1/YA/1402:1405, 1/YA/1597:1604 | No text annotation | ||
| J5_4WWW_017 | 1/YA/1674:1682, 1/YA/1706:1707, 1/YA/1751:1752, 1/YA/1756:1764, 1/YA/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J5_4WWW_018 | 1/YA/2057:2064, 1/YA/2446:2453, 1/YA/2500:2507, 1/YA/2582:2588, 1/YA/2606:2611 | No text annotation | ||
| J5_4WWW_019 | 1/YA/2074:2077, 1/YA/2243:2246, 1/YA/2258:2259, 1/YA/2281:2282, 1/YA/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.1 | |
| J6_4WWW_001 | 1/RA/45:46, 1/RA/179:183, 1/RA/214:224, 1/RA/231:235, 1/RA/262:266, 1/RA/426:433 | No text annotation | ||
| J6_4WWW_002 | 1/RA/2074:2077, 1/RA/2243:2246, 1/RA/2258:2259, 1/RA/2281:2284, 1/RA/2384:2395, 1/RA/2421:2435 | No text annotation | ||
| J6_4WWW_003 | 1/YA/45:46, 1/YA/179:183, 1/YA/214:224, 1/YA/231:235, 1/YA/262:266, 1/YA/426:433 | No text annotation | ||
| J7_4WWW_001 | 1/RA/8:15, 1/RA/525:531, 1/RA/2018:2023, 1/RA/2040:2043, 1/RA/2625:2630, 1/RA/2788:2789, 1/RA/2894:2895 | No text annotation | ||
| J7_4WWW_002 | 1/RA/817:822, 1/RA/835:838, 1/RA/940:946, 1/RA/971:976, 1/RA/987:991, 1/RA/1163:1164, 1/RA/1185:1190 | No text annotation | ||
| J7_4WWW_003 | 1/YA/8:15, 1/YA/525:531, 1/YA/2018:2023, 1/YA/2040:2043, 1/YA/2625:2630, 1/YA/2788:2789, 1/YA/2894:2895 | No text annotation | ||
| J7_4WWW_004 | 1/YA/817:822, 1/YA/835:838, 1/YA/940:946, 1/YA/971:976, 1/YA/987:991, 1/YA/1163:1164, 1/YA/1185:1190 | No text annotation | ||
| J10_4WWW_001 | 1/YA/8:15, 1/YA/525:533, 1/YA/560:566, 1/YA/575:579, 1/YA/1261:1262, 1/YA/2017:2023, 1/YA/2040:2043, 1/YA/2625:2630, 1/YA/2788:2789, 1/YA/2894:2895 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4WWW_044 | No text annotation | ||
| J3_4WWW_023 | No text annotation | ||
| J3_4WWW_067 | No text annotation | ||
| J3_4WWW_071 | No text annotation | ||
| J3_4WWW_072 | No text annotation | ||
| J3_4WWW_074 | No text annotation | ||
| J3_4WWW_035 | No text annotation | ||
| J3_4WWW_038 | No text annotation | ||
| J4_4WWW_016 | No text annotation | ||
| J4_4WWW_018 | No text annotation | ||
| J4_4WWW_021 | No text annotation | ||
| J5_4WWW_013 | No text annotation | ||
| J5_4WWW_015 | No text annotation |
Coloring options: