HL_4WWW_136
3D structure
- PDB id
- 4WWW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to CEM-101
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCUAAUCUG
- Length
- 10 nucleotides
- Bulged bases
- 4WWW|1|YA|G|60, 4WWW|1|YA|C|61
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WWW_136 not in the Motif Atlas
- Geometric match to HL_6N5P_003
- Geometric discrepancy: 0.28
- The information below is about HL_6N5P_003
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
4WWW|1|YA|U|59
4WWW|1|YA|G|60
4WWW|1|YA|C|61
4WWW|1|YA|U|62
4WWW|1|YA|A|63
4WWW|1|YA|A|64
4WWW|1|YA|U|65
4WWW|1|YA|C|66
4WWW|1|YA|U|67
4WWW|1|YA|G|68
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y2
- 50S ribosomal protein L34
- Chain YT
- 50S ribosomal protein L23
- Chain YY
- 50S ribosomal protein L29
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