HL_4WWW_145

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

4WWW|1|YA|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WWW_145 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.2764

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

4WWW|1|YA|G|327
4WWW|1|YA|U|328
4WWW|1|YA|G|329
4WWW|1|YA|A|330
4WWW|1|YA|C|331
4WWW|1|YA|A|332
4WWW|1|YA|G|333
4WWW|1|YA|C|334
4WWW|1|YA|C|335

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L4

Chain YU

50S ribosomal protein L24