HL_4WWW_147

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

4WWW|1|YA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WWW_147 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.157

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4WWW|1|YA|G|410
4WWW|1|YA|G|411
4WWW|1|YA|A|412
4WWW|1|YA|C|413
4WWW|1|YA|C|414
4WWW|1|YA|A|415
4WWW|1|YA|U|416
4WWW|1|YA|C|417

Current chains

Chain YA

23S rRNA

Nearby chains