HL_4WWW_169

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4WWW|1|YA|U|1396, 4WWW|1|YA|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WWW_169 not in the Motif Atlas

Geometric match to HL_4V9F_037

Geometric discrepancy: 0.1661

The information below is about HL_4V9F_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4WWW|1|YA|G|1389
4WWW|1|YA|U|1390
4WWW|1|YA|U|1391
4WWW|1|YA|A|1392
4WWW|1|YA|A|1393
4WWW|1|YA|U|1394
4WWW|1|YA|A|1395
4WWW|1|YA|U|1396
4WWW|1|YA|U|1397
4WWW|1|YA|C|1398

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YT

50S ribosomal protein L23