HL_4WWW_185

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACGCCAGUC

Length

10 nucleotides

Bulged bases

4WWW|1|YA|C|2145, 4WWW|1|YA|C|2146, 4WWW|1|YA|A|2147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WWW_185 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3809

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4WWW|1|YA|G|2141
4WWW|1|YA|A|2142
4WWW|1|YA|C|2143
4WWW|1|YA|G|2144
4WWW|1|YA|C|2145
4WWW|1|YA|C|2146
4WWW|1|YA|A|2147
4WWW|1|YA|G|2148
4WWW|1|YA|U|2149
4WWW|1|YA|C|2150

Current chains

Chain YA

23S rRNA

Nearby chains