HL_4WZD_235

3D structure

PDB id

4WZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with cognate tRNA-Tyr in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

4WZD|1|1H|A|1096||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WZD_235 not in the Motif Atlas

Geometric match to HL_3WQY_001

Geometric discrepancy: 0.3991

The information below is about HL_3WQY_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_57684.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4WZD|1|1H|G|1091||||P_1
4WZD|1|1H|C|1092||||P_1
4WZD|1|1H|G|1093||||P_1
4WZD|1|1H|U|1094||||P_1
4WZD|1|1H|A|1095||||P_1
4WZD|1|1H|A|1096||||P_1
4WZD|1|1H|U|1097||||P_1
4WZD|1|1H|A|1098||||P_1
4WZD|1|1H|G|1099||||P_1
4WZD|1|1H|C|1100||||P_1

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6