HL_4WZD_239
3D structure
- PDB id
- 4WZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with cognate tRNA-Tyr in the P-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- ACU(QUO)UA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: QUO, MIA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WZD_239 not in the Motif Atlas
- Homologous match to HL_4WZD_238
- Geometric discrepancy: 0.0993
- The information below is about HL_4WZD_238
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 46
Unit IDs
4WZD|1|2L|A|32||||P_1
4WZD|1|2L|C|33||||P_1
4WZD|1|2L|U|34||||P_1
4WZD|1|2L|QUO|35||||P_1
4WZD|1|2L|U|36||||P_1
4WZD|1|2L|A|37||||P_1
4WZD|1|2L|MIA|38||||P_1
4WZD|1|2L|A|39||||P_1
4WZD|1|2L|PSU|40||||P_1
Current chains
- Chain 2L
- tRNA-Tyr
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3L
- Transfer RNA; tRNA
- Chain 4L
- mRNA
- Chain 82
- 30S ribosomal protein S9
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