HL_4WZD_240

3D structure

PDB id

4WZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with cognate tRNA-Tyr in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

G(5MU)(PSU)CGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WZD_240 not in the Motif Atlas

Homologous match to HL_7LYF_003

Geometric discrepancy: 0.2184

The information below is about HL_7LYF_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4WZD|1|2L|G|62||||P_1
4WZD|1|2L|5MU|63||||P_1
4WZD|1|2L|PSU|64||||P_1
4WZD|1|2L|C|65||||P_1
4WZD|1|2L|G|66||||P_1
4WZD|1|2L|A|67||||P_1
4WZD|1|2L|A|68||||P_1
4WZD|1|2L|U|69||||P_1
4WZD|1|2L|C|70||||P_1

Current chains

Chain 2L

tRNA-Tyr

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 45

50S ribosomal protein L16

Chain 49

50S ribosomal protein L5