3D structure

PDB id
7LYF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dengue virus RNA promoter stem-loop A fused with tRNA-scaffold
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GUUCAAGUC
Length
9 nucleotides
Bulged bases (A, C, G, U)
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_22280.5
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
71

Unit IDs

7LYF|1|A|G|116
7LYF|1|A|U|117
7LYF|1|A|U|118
7LYF|1|A|C|119
7LYF|1|A|A|120
7LYF|1|A|A|121
7LYF|1|A|G|122
7LYF|1|A|U|123
7LYF|1|A|C|124

Current chains

Chain A
RNA promoter stem-loop A fused with tRNA

Nearby chains

No other chains within 10Å

Coloring options:

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