HL_7LYF_003

3D structure

PDB id

7LYF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dengue virus RNA promoter stem-loop A fused with tRNA-scaffold

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUCAAGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

7LYF|1|A|G|116
7LYF|1|A|U|117
7LYF|1|A|U|118
7LYF|1|A|C|119
7LYF|1|A|A|120
7LYF|1|A|A|121
7LYF|1|A|G|122
7LYF|1|A|U|123
7LYF|1|A|C|124

Current chains

Chain A

RNA promoter stem-loop A fused with tRNA

Nearby chains