HL_4WZJ_005

3D structure

PDB id

4WZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spliceosomal U4 snRNP core domain

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WZJ_005 not in the Motif Atlas

Geometric match to HL_6N2V_002

Geometric discrepancy: 0.0887

The information below is about HL_6N2V_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4WZJ|1|VVV|U|12
4WZJ|1|VVV|G|13
4WZJ|1|VVV|A|14
4WZJ|1|VVV|A|15
4WZJ|1|VVV|A|16
4WZJ|1|VVV|A|17

Current chains

Chain VVV

U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.

Nearby chains

Chain J

Small nuclear ribonucleoprotein Sm D1

Chain X

U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.