RNA 3D Hub //

4WZJ Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4WZJ_0011/V/12:17GNRA
geometric
HL_6N2V_003
HL_37824.5
HL_4WZJ_0021/V/50:55UNCG variation
geometric
HL_2CZJ_007
HL_23696.2
HL_4WZJ_0031/VV/12:17GNRA
geometric
HL_6N2V_002
HL_37824.5
HL_4WZJ_0041/VV/50:55UNCG variation
geometric
HL_2CZJ_007
HL_23696.2
HL_4WZJ_0051/VVV/12:17GNRA
geometric
HL_6N2V_002
HL_37824.5
HL_4WZJ_0061/VVV/50:55UNCG variation
geometric
HL_2CZJ_007
HL_23696.2
HL_4WZJ_0071/VVVV/12:17GNRA
geometric
HL_6N2V_002
HL_37824.5
HL_4WZJ_0081/VVVV/50:55UNCG variation
geometric
HL_2CZJ_007
HL_23696.2
HL_4WZJ_0091/X/12:17GNRA
geometric
HL_6N2V_002
HL_37824.5
HL_4WZJ_0101/X/50:55UNCG variation
geometric
HL_2CZJ_007
HL_23696.2
HL_4WZJ_0111/XX/12:17GNRA
geometric
HL_6N2V_002
HL_37824.5
HL_4WZJ_0121/XX/50:55UNCG variation
geometric
HL_2CZJ_007
HL_23696.2
HL_4WZJ_0131/XXX/12:17GNRA
geometric
HL_6N2V_003
HL_37824.5
HL_4WZJ_0141/XXX/50:55UNCG variation
geometric
HL_2CZJ_007
HL_23696.2
HL_4WZJ_0151/XXXX/12:17GNRA
geometric
HL_6N2V_002
HL_37824.5
HL_4WZJ_0161/XXXX/50:55UNCG variation
geometric
HL_2CZJ_007
HL_23696.2
HL_4WZJ_0171/Y/12:17GNRA
geometric
HL_6N2V_002
HL_37824.5
HL_4WZJ_0181/Y/50:55UNCG variation
geometric
HL_2CZJ_007
HL_23696.2
HL_4WZJ_0191/YY/12:17GNRA
geometric
HL_6N2V_002
HL_37824.5
HL_4WZJ_0201/YY/50:55UNCG variation
geometric
HL_2CZJ_007
HL_23696.2
HL_4WZJ_0211/YYY/12:17GNRA
geometric
HL_6N2V_002
HL_37824.5
HL_4WZJ_0221/YYY/50:55GNRA
geometric
HL_6SVS_001
HL_37824.5
HL_4WZJ_0231/YYYY/12:17GNRA
geometric
HL_6N2V_003
HL_37824.5
HL_4WZJ_0241/YYYY/50:55UNCG variation
geometric
HL_2CZJ_007
HL_23696.2

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4WZJ_0011/V/3:4,
1/V/25:27		Single bulged U
geometric
IL_4KZD_001
IL_89505.2
IL_4WZJ_0021/V/6:8,
1/V/21:23		Isolated non-canonical cWW pair
geometric
IL_3HHN_004
IL_10289.2
IL_4WZJ_0031/V/46:49,
1/V/56:60		Receptor of 11-nt loop-receptor motif
geometric
IL_5BTM_002
IL_53448.1
IL_4WZJ_0041/VV/3:4,
1/VV/25:27		Single bulged U
geometric
IL_4KZD_001
IL_89505.2
IL_4WZJ_0051/VV/6:8,
1/VV/21:23		Isolated non-canonical cWW pair
geometric
IL_3DIL_006
IL_10289.2
IL_4WZJ_0061/VV/46:49,
1/VV/56:60		Receptor of 11-nt loop-receptor motif
geometric
IL_1KXK_002
IL_53448.1
IL_4WZJ_0071/VVV/3:4,
1/VVV/25:27		Multiple bulged bases
geometric
IL_3MXH_004
IL_82107.2
IL_4WZJ_0081/VVV/6:8,
1/VVV/21:23		Isolated non-canonical cWW pair
geometric
IL_3HHN_004
IL_10289.2
IL_4WZJ_0091/VVV/46:49,
1/VVV/56:60		Receptor of 11-nt loop-receptor motif
geometric
IL_3IGI_012
IL_67767.2
IL_4WZJ_0101/VVVV/3:4,
1/VVVV/25:27		No text annotation
IL_4WZJ_0111/VVVV/6:8,
1/VVVV/21:23		Isolated non-canonical cWW pair
geometric
IL_3DIL_006
IL_10289.2
IL_4WZJ_0121/VVVV/46:49,
1/VVVV/56:60		Receptor of 11-nt loop-receptor motif
geometric
IL_5BTM_002
IL_53448.1
IL_4WZJ_0131/X/3:4,
1/X/25:27		Single bulged U
geometric
IL_4KZD_001
IL_89505.2
IL_4WZJ_0141/X/6:8,
1/X/21:23		Isolated non-canonical cWW pair
geometric
IL_3HHN_004
IL_10289.2
IL_4WZJ_0151/X/46:49,
1/X/56:60		Receptor of 11-nt loop-receptor motif
geometric
IL_3IGI_012
IL_67767.2
IL_4WZJ_0161/XX/3:4,
1/XX/25:27		Single bulged U
geometric
IL_4KZD_001
IL_89505.2
IL_4WZJ_0171/XX/6:8,
1/XX/21:23		Isolated non-canonical cWW pair
geometric
IL_3DIL_006
IL_10289.2
IL_4WZJ_0181/XX/46:49,
1/XX/56:60		Receptor of 11-nt loop-receptor motif
geometric
IL_5BTM_002
IL_53448.1
IL_4WZJ_0191/XXX/3:4,
1/XXX/25:27		Multiple bulged bases
geometric
IL_1FUF_002
IL_82107.2
IL_4WZJ_0201/XXX/6:8,
1/XXX/21:23		Isolated non-canonical cWW pair
geometric
IL_3DIL_006
IL_10289.2
IL_4WZJ_0211/XXX/46:49,
1/XXX/56:60		Receptor of 11-nt loop-receptor motif
IL_4WZJ_0221/XXXX/3:4,
1/XXXX/25:27		Multiple bulged bases
geometric
IL_1FUF_002
IL_82107.2
IL_4WZJ_0231/XXXX/6:8,
1/XXXX/21:23		Isolated non-canonical cWW pair
geometric
IL_3DIL_006
IL_10289.2
IL_4WZJ_0241/XXXX/46:49,
1/XXXX/56:60		Receptor of 11-nt loop-receptor motif
geometric
IL_3IGI_012
IL_67767.2
IL_4WZJ_0251/Y/3:4,
1/Y/25:27		Single bulged U
geometric
IL_4KZD_001
IL_89505.2
IL_4WZJ_0261/Y/6:8,
1/Y/21:23		Isolated non-canonical cWW pair
geometric
IL_4V88_467
NA
IL_4WZJ_0271/Y/46:49,
1/Y/56:60		Receptor of 11-nt loop-receptor motif
geometric
IL_3IGI_012
IL_67767.2
IL_4WZJ_0281/YY/3:4,
1/YY/25:27		Multiple bulged bases
geometric
IL_3MXH_004
IL_82107.2
IL_4WZJ_0291/YY/6:8,
1/YY/21:23		Isolated non-canonical cWW pair
geometric
IL_3HHN_004
IL_10289.2
IL_4WZJ_0301/YY/46:49,
1/YY/56:60		Receptor of 11-nt loop-receptor motif
geometric
IL_3IGI_012
IL_67767.2
IL_4WZJ_0311/YYY/3:4,
1/YYY/25:27		Multiple bulged bases
geometric
IL_1FUF_002
IL_82107.2
IL_4WZJ_0321/YYY/6:8,
1/YYY/21:23		Isolated non-canonical cWW pair
geometric
IL_3HHN_004
IL_10289.2
IL_4WZJ_0331/YYY/46:49,
1/YYY/56:60		Receptor of 11-nt loop-receptor motif
geometric
IL_3IGI_012
IL_67767.2
IL_4WZJ_0341/YYYY/3:4,
1/YYYY/25:27		Single bulged U
geometric
IL_3W3S_002
IL_89505.2
IL_4WZJ_0351/YYYY/6:8,
1/YYYY/21:23		Isolated non-canonical cWW pair
geometric
IL_4V88_467
NA
IL_4WZJ_0361/YYYY/46:49,
1/YYYY/56:60		Receptor of 11-nt loop-receptor motif
geometric
IL_3IGI_012
IL_67767.2

Problematic loops

#loop idProblemSequence
IL_4WZJ_037No text annotation

Valid loops

No loops found

Problematic loops

No problematic loops


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