HL_4WZJ_013
3D structure
- PDB id
- 4WZJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Spliceosomal U4 snRNP core domain
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- UGAAAA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_54105.2
- Basepair signature
- cWW-tSH-R-R
- Number of instances in this motif group
- 298
Unit IDs
4WZJ|1|XXX|U|12
4WZJ|1|XXX|G|13
4WZJ|1|XXX|A|14
4WZJ|1|XXX|A|15
4WZJ|1|XXX|A|16
4WZJ|1|XXX|A|17
Current chains
- Chain XXX
- U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.
Nearby chains
- Chain B
- Small nuclear ribonucleoprotein-associated proteins B and B'
- Chain C
- Small nuclear ribonucleoprotein Sm D1
- Chain D
- Small nuclear ribonucleoprotein Sm D2
- Chain V
- U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.
Coloring options: