HL_4X0A_001

3D structure

PDB id

4X0A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tRNA-processing enzyme complex 6

Experimental method

X-RAY DIFFRACTION

Resolution

3.51 Å

Loop

Sequence

CAGUUGGUAG

Length

10 nucleotides

Bulged bases

4X0A|1|B|U|15, 4X0A|1|B|U|16, 4X0A|1|B|G|17, 4X0A|1|B|G|18, 4X0A|1|B|U|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4X0A_001 not in the Motif Atlas

Homologous match to HL_6ORD_035

Geometric discrepancy: 0.2521

The information below is about HL_6ORD_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07951.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4X0A|1|B|C|12
4X0A|1|B|A|13
4X0A|1|B|G|14
4X0A|1|B|U|15
4X0A|1|B|U|16
4X0A|1|B|G|17
4X0A|1|B|G|18
4X0A|1|B|U|19
4X0A|1|B|A|20
4X0A|1|B|G|21

Current chains

Chain B

RNA (73-MER)

Nearby chains

Chain A

Poly A polymerase