HL_4XEJ_011

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4XEJ|1|A16S|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_011 not in the Motif Atlas

Homologous match to HL_5J7L_011

Geometric discrepancy: 0.1694

The information below is about HL_5J7L_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4XEJ|1|A16S|C|419
4XEJ|1|A16S|U|420
4XEJ|1|A16S|U|421
4XEJ|1|A16S|C|422
4XEJ|1|A16S|G|423
4XEJ|1|A16S|G|424

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain AS03

30S ribosomal protein S3

Chain AS04

30S ribosomal protein S4