RNA 3D Hub //

4XEJ Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4XEJ_0011/A16S/12:22No text annotation
homologous
HL_4LFB_001
HL_31940.1
HL_4XEJ_2341/A16S/68I:68QNo text annotation
HL_4XEJ_0031/A16S/158:163GNRA
geometric
HL_4LFB_003
HL_34789.1
HL_4XEJ_0041/A16S/186F:186KNo text annotation
homologous
HL_4LFB_004
HL_89167.1
HL_4XEJ_0051/A16S/201:216No text annotation
HL_4XEJ_0061/A16S/259:267GNRA related
homologous
HL_4LFB_006
HL_36455.1
HL_4XEJ_0071/A16S/296:301GNRA
homologous
HL_4LFB_007
HL_34789.1
HL_4XEJ_0081/A16S/320:333No text annotation
homologous
HL_4LFB_008
HL_39665.1
HL_4XEJ_0091/A16S/342:347UNCG
homologous
HL_4LFB_009
HL_61337.1
HL_4XEJ_0101/A16S/379:384GNRA
homologous
HL_4LFB_010
HL_34789.1
HL_4XEJ_0111/A16S/419:424UNCG
homologous
HL_5J7L_011
NA
HL_4XEJ_0121/A16S/458:474GNRA
homologous
HL_4LFB_012
HL_34789.1
HL_4XEJ_0131/A16S/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.6
HL_4XEJ_0141/A16S/617:623No text annotation
homologous
HL_6CZR_085
NA
HL_4XEJ_0151/A16S/689:698No text annotation
homologous
HL_4LFB_015
HL_38491.1
HL_4XEJ_0161/A16S/726:731GNRA
homologous
HL_4LFB_016
HL_34789.1
HL_4XEJ_0171/A16S/786:796No text annotation
homologous
HL_4LFB_017
HL_38491.1
HL_4XEJ_0181/A16S/838:848Mini UNCG
homologous
HL_4LFB_018
HL_90436.1
HL_4XEJ_2351/A16S/862:867GNRA
homologous
HL_5J7L_019
NA
HL_4XEJ_0201/A16S/897:902GNRA
homologous
HL_5J7L_020
NA
HL_4XEJ_0211/A16S/963:972No text annotation
homologous
HL_4LFB_021
HL_97521.1
HL_4XEJ_0221/A16S/1012:1017GNRA
homologous
HL_4LFB_022
HL_34789.1
HL_4XEJ_0241/A16S/1076:1081GNRA
homologous
HL_4LFB_024
HL_34789.1
HL_4XEJ_0251/A16S/1089:1096T-loop related
homologous
HL_4LFB_025
HL_63894.1
HL_4XEJ_0261/A16S/1134:1140No text annotation
homologous
HL_4LFB_026
HL_92935.1
HL_4XEJ_0271/A16S/1165:1171GNRA
homologous
HL_4LFB_027
HL_34789.1
HL_4XEJ_0281/A16S/1265:1270GNRA
homologous
HL_4LFB_028
HL_34789.1
HL_4XEJ_0291/A16S/1314:1323T-loop with 3 stacked bulged bases
geometric
HL_4LFB_029
HL_93658.1
HL_4XEJ_2361/A16S/1356:1366No text annotation
homologous
HL_4LFB_030
HL_86432.1
HL_4XEJ_0311/A16S/1440G:1440LUNCG
homologous
HL_5J7L_030
NA
HL_4XEJ_0321/A16S/1515:1520GNRA
homologous
HL_4LFB_032
HL_34789.1
HL_4XEJ_0331/A23S/59:68No text annotation
homologous
HL_7RQB_001
NA
HL_4XEJ_0341/A23S/87:95No text annotation
homologous
HL_7RQB_002
NA
HL_4XEJ_2371/A23S/123:128No text annotation
homologous
HL_7A0S_003
HL_82710.3
HL_4XEJ_0361/A23S/137A:137FNo text annotation
homologous
HL_7RQB_004
NA
HL_4XEJ_0371/A23S/155:171GNRA
homologous
HL_7A0S_005
HL_34789.1
HL_4XEJ_2131/A23S/188:208No text annotation
HL_4XEJ_0381/A23S/194:201No text annotation
geometric
HL_5J7L_139
NA
HL_4XEJ_0391/A23S/225:230No text annotation
homologous
HL_7RQB_007
NA
HL_4XEJ_0401/A23S/246:252No text annotation
homologous
HL_7RQB_008
NA
HL_4XEJ_0411/A23S/270K:270NNo text annotation
HL_4XEJ_2151/A23S/270:270No text annotation
homologous
HL_9DFE_008
NA
HL_4XEJ_0421/A23S/305:312No text annotation
homologous
HL_7RQB_010
NA
HL_4XEJ_0431/A23S/319:323No text annotation
homologous
HL_4WF9_011
HL_75660.6
HL_4XEJ_0441/A23S/327:335T-loop with unstacked turn
homologous
HL_7RQB_012
NA
HL_4XEJ_2381/A23S/383:391No text annotation
HL_4XEJ_0461/A23S/410:417Pseudoknot geometry
homologous
HL_4WF9_014
HL_30680.4
HL_4XEJ_0471/A23S/462:467GNRA
homologous
HL_7A0S_015
HL_34789.1
HL_4XEJ_0481/A23S/487:493GNRA
homologous
HL_4WF9_016
HL_34789.1
HL_4XEJ_0491/A23S/543:550GNRA
geometric
HL_5J7L_004
NA
HL_4XEJ_0501/A23S/566:575No text annotation
geometric
HL_7RQB_018
NA
HL_4XEJ_0511/A23S/611A:611GNo text annotation
homologous
HL_7RQB_019
NA
HL_4XEJ_0521/A23S/629:634GNRA
homologous
HL_7RQB_020
NA
HL_4XEJ_0531/A23S/640:648tRNA anticodon loop
geometric
HL_5UD5_002
HL_68642.1
HL_4XEJ_0541/A23S/712:719No text annotation
homologous
HL_7RQB_022
NA
HL_4XEJ_0551/A23S/744:753No text annotation
homologous
HL_7RQB_023
NA
HL_4XEJ_0561/A23S/779:785UNCG variation
homologous
HL_7A0S_023
HL_51020.1
HL_4XEJ_0571/A23S/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_4XEJ_2391/A23S/883:893No text annotation
HL_4XEJ_0581/A23S/884:892No text annotation
homologous
HL_7RQB_026
NA
HL_4XEJ_0591/A23S/955:962GNRA
homologous
HL_7RQB_027
NA
HL_4XEJ_0601/A23S/978:985No text annotation
homologous
HL_7RQB_028
NA
HL_4XEJ_0611/A23S/1064:1074No text annotation
homologous
HL_5J7L_161
NA
HL_4XEJ_0621/A23S/1092:1099No text annotation
homologous
HL_7RQB_030
NA
HL_4XEJ_0631/A23S/1171:1178UNCG variation
geometric
HL_2CZJ_007
NA
HL_4XEJ_0641/A23S/1222:1227GNRA
homologous
HL_7RQB_032
NA
HL_4XEJ_0651/A23S/1281:1289No text annotation
homologous
HL_7RQB_033
NA
HL_4XEJ_0661/A23S/1324:1330No text annotation
homologous
HL_7RQB_034
NA
HL_4XEJ_0671/A23S/1363:1368GNRA
homologous
HL_7RQB_035
NA
HL_4XEJ_0681/A23S/1389:1398No text annotation
homologous
HL_7RQB_036
NA
HL_4XEJ_2191/A23S/1448:1463No text annotation
HL_4XEJ_0691/A23S/1450:1461UNCG variation
geometric
HL_6VMY_004
NA
HL_4XEJ_2401/A23S/1492:1498No text annotation
HL_4XEJ_0711/A23S/1533:1538UNCG variation
geometric
HL_2CZJ_007
NA
HL_4XEJ_0721/A23S/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_90436.1
HL_4XEJ_0731/A23S/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_4XEJ_2411/A23S/1630A:1635Pseudoknot geometry with 3' bulge
homologous
HL_9DFE_039
HL_49081.1
HL_4XEJ_0751/A23S/1691:1696UNCG
homologous
HL_5J7L_175
NA
HL_4XEJ_0761/A23S/1712F:1712LNo text annotation
homologous
HL_7RQB_043
NA
HL_4XEJ_0771/A23S/1752:1756No text annotation
homologous
HL_9DFE_042
HL_80709.4
HL_4XEJ_0781/A23S/1777:1787No text annotation
homologous
HL_5J7L_178
NA
HL_4XEJ_0791/A23S/1806:1811GNRA
homologous
HL_7RQB_046
NA
HL_4XEJ_0801/A23S/1864:1878GNRA
homologous
HL_7RQB_047
NA
HL_4XEJ_0811/A23S/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_4XEJ_0821/A23S/1949:1957No text annotation
homologous
HL_7A0S_048
HL_61418.1
HL_4XEJ_0831/A23S/2027:2036No text annotation
homologous
HL_7RQB_050
NA
HL_4XEJ_0851/A23S/2202B:2202GNo text annotation
geometric
HL_6U8D_003
HL_32346.5
HL_4XEJ_0861/A23S/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_4XEJ_0871/A23S/2264:2276No text annotation
homologous
HL_4WF9_050
HL_02042.1
HL_4XEJ_2431/A23S/2304:2312No text annotation
homologous
HL_7A0S_076
HL_02452.1
HL_4XEJ_0891/A23S/2324:2331Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_4XEJ_0901/A23S/2355:2362No text annotation
homologous
HL_7RQB_057
NA
HL_4XEJ_0911/A23S/2374:2379GNRA
homologous
HL_5J7L_191
NA
HL_4XEJ_0921/A23S/2404:2413No text annotation
homologous
HL_7RQB_059
NA
HL_4XEJ_0931/A23S/2471:2479No text annotation
homologous
HL_5J7L_193
NA
HL_4XEJ_2221/A23S/2528:2535GNRA variation
homologous
HL_9DFE_059
HL_46665.1
HL_4XEJ_0951/A23S/2551:2557No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_4XEJ_0961/A23S/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_4XEJ_0971/A23S/2658:2663GNRA
homologous
HL_7RQB_064
NA
HL_4XEJ_0981/A23S/2701:2706No text annotation
homologous
HL_7RQB_065
NA
HL_4XEJ_0991/A23S/2745:2759No text annotation
homologous
HL_7RQB_066
NA
HL_4XEJ_1011/A23S/2819:2827No text annotation
homologous
HL_7RQB_068
NA
HL_4XEJ_2441/A23S/2856:2861GNRA
homologous
HL_7A0S_068
HL_34789.1
HL_4XEJ_2451/A5S/34:48No text annotation
homologous
HL_9DFE_067
HL_97756.3
HL_4XEJ_1031/A5S/38:44No text annotation
homologous
HL_5J7L_203
NA
HL_4XEJ_1041/A5S/86:90GNRA
homologous
HL_7A0S_070
HL_34789.1
HL_4XEJ_1051/AIRE/6161:6168No text annotation
HL_4XEJ_1061/B16S/12:22No text annotation
homologous
HL_4LFB_001
HL_31940.1
HL_4XEJ_1081/B16S/158:163GNRA
homologous
HL_4LFB_003
HL_34789.1
HL_4XEJ_1091/B16S/186F:186KNo text annotation
homologous
HL_4LFB_004
HL_89167.1
HL_4XEJ_1101/B16S/201:216Mini UNCG
homologous
HL_6CZR_234
NA
HL_4XEJ_2471/B16S/259:267GNRA related
homologous
HL_4LFB_006
HL_36455.1
HL_4XEJ_1121/B16S/296:301GNRA
homologous
HL_4LFB_007
HL_34789.1
HL_4XEJ_1131/B16S/320:333No text annotation
homologous
HL_4LFB_008
HL_39665.1
HL_4XEJ_1141/B16S/342:347UNCG
homologous
HL_4LFB_009
HL_61337.1
HL_4XEJ_1151/B16S/379:384GNRA
homologous
HL_5J7L_010
NA
HL_4XEJ_1161/B16S/419:424UNCG
homologous
HL_5J7L_011
NA
HL_4XEJ_1171/B16S/458:474GNRA
homologous
HL_4LFB_012
HL_34789.1
HL_4XEJ_1181/B16S/522:527Mini UNCG
geometric
HL_4YAZ_004
HL_90436.1
HL_4XEJ_1191/B16S/617:623No text annotation
homologous
HL_6CZR_085
NA
HL_4XEJ_1201/B16S/689:698No text annotation
homologous
HL_5J7L_015
NA
HL_4XEJ_1211/B16S/726:731GNRA
homologous
HL_4LFB_016
HL_34789.1
HL_4XEJ_1221/B16S/786:796No text annotation
homologous
HL_4LFB_017
HL_38491.1
HL_4XEJ_1231/B16S/838:848Mini UNCG
homologous
HL_4LFB_018
HL_90436.1
HL_4XEJ_1241/B16S/862:867GNRA
homologous
HL_4LFB_019
HL_34789.1
HL_4XEJ_1251/B16S/897:902GNRA
homologous
HL_6CZR_091
NA
HL_4XEJ_1261/B16S/963:972No text annotation
homologous
HL_4LFB_021
HL_97521.1
HL_4XEJ_1271/B16S/1012:1017GNRA
homologous
HL_4LFB_022
HL_34789.1
HL_4XEJ_1281/B16S/1028B:1028GNo text annotation
homologous
HL_4LFB_023
NA
HL_4XEJ_1291/B16S/1076:1081GNRA
homologous
HL_5J7L_023
NA
HL_4XEJ_1301/B16S/1089:1096T-loop related
homologous
HL_4LFB_025
HL_63894.1
HL_4XEJ_1311/B16S/1134:1140No text annotation
homologous
HL_4LFB_026
HL_92935.1
HL_4XEJ_1321/B16S/1165:1171GNRA
homologous
HL_4LFB_027
HL_34789.1
HL_4XEJ_1331/B16S/1265:1270No text annotation
homologous
HL_6CZR_099
NA
HL_4XEJ_1341/B16S/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_93658.1
HL_4XEJ_1351/B16S/1356:1366No text annotation
homologous
HL_4LFB_030
HL_86432.1
HL_4XEJ_1361/B16S/1440G:1440LUNCG
homologous
HL_4LFB_031
HL_61337.1
HL_4XEJ_1371/B16S/1515:1520GNRA
homologous
HL_4LFB_032
HL_34789.1
HL_4XEJ_1381/B23S/59:68No text annotation
homologous
HL_7RQB_001
NA
HL_4XEJ_1391/B23S/87:95No text annotation
homologous
HL_7RQB_002
NA
HL_4XEJ_2481/B23S/123:128No text annotation
homologous
HL_9DFE_003
HL_82710.3
HL_4XEJ_1411/B23S/137A:137FNo text annotation
homologous
HL_7RQB_004
NA
HL_4XEJ_1421/B23S/155:171No text annotation
homologous
HL_7RQB_005
NA
HL_4XEJ_1431/B23S/194:201No text annotation
geometric
HL_5J7L_139
NA
HL_4XEJ_1441/B23S/225:230No text annotation
homologous
HL_7RQB_007
NA
HL_4XEJ_1451/B23S/246:252No text annotation
homologous
HL_7RQB_008
NA
HL_4XEJ_1461/B23S/270J:270PNo text annotation
homologous
HL_8VTW_008
NA
HL_4XEJ_1471/B23S/305:312No text annotation
homologous
HL_7RQB_010
NA
HL_4XEJ_1481/B23S/319:323No text annotation
homologous
HL_5J7L_143
NA
HL_4XEJ_1491/B23S/327:335T-loop with unstacked turn
homologous
HL_7RQB_012
NA
HL_4XEJ_2491/B23S/383:391No text annotation
HL_4XEJ_1511/B23S/410:417No text annotation
homologous
HL_7RQB_014
NA
HL_4XEJ_1521/B23S/462:467GNRA
homologous
HL_7A0S_015
HL_34789.1
HL_4XEJ_1531/B23S/487:493GNRA
homologous
HL_4WF9_016
HL_34789.1
HL_4XEJ_1541/B23S/543:550GNRA
geometric
HL_5J7L_004
NA
HL_4XEJ_1551/B23S/566:575No text annotation
geometric
HL_7RQB_018
NA
HL_4XEJ_1561/B23S/611A:611GNo text annotation
homologous
HL_7RQB_019
NA
HL_4XEJ_1571/B23S/629:634GNRA
homologous
HL_5J7L_152
NA
HL_4XEJ_1581/B23S/641:647No text annotation
HL_4XEJ_1591/B23S/712:719No text annotation
homologous
HL_7RQB_022
NA
HL_4XEJ_1601/B23S/744:753No text annotation
homologous
HL_7RQB_023
NA
HL_4XEJ_1611/B23S/779:785UNCG variation
homologous
HL_7A0S_023
HL_51020.1
HL_4XEJ_1621/B23S/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_4XEJ_1631/B23S/884:892No text annotation
homologous
HL_7RQB_026
NA
HL_4XEJ_1641/B23S/955:962GNRA
homologous
HL_7RQB_027
NA
HL_4XEJ_1651/B23S/978:985No text annotation
homologous
HL_7RQB_028
NA
HL_4XEJ_1661/B23S/1064:1074No text annotation
homologous
HL_6PRV_001
HL_20174.1
HL_4XEJ_2321/B23S/1091:1100No text annotation
homologous
HL_5J7L_212
NA
HL_4XEJ_1671/B23S/1092:1099No text annotation
homologous
HL_7RQB_030
NA
HL_4XEJ_1681/B23S/1171:1178UNCG variation
geometric
HL_2CZJ_007
NA
HL_4XEJ_1691/B23S/1222:1227GNRA
homologous
HL_7RQB_032
NA
HL_4XEJ_1701/B23S/1281:1289No text annotation
homologous
HL_7RQB_033
NA
HL_4XEJ_1711/B23S/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_7A0S_033
HL_49081.1
HL_4XEJ_1721/B23S/1363:1368GNRA
homologous
HL_7RQB_035
NA
HL_4XEJ_1731/B23S/1389:1398No text annotation
homologous
HL_7RQB_036
NA
HL_4XEJ_1741/B23S/1450:1461Pseudoknot
homologous
HL_7A0S_036
HL_00824.1
HL_4XEJ_1751/B23S/1492:1498No text annotation
HL_4XEJ_1761/B23S/1533:1538UNCG variation
geometric
HL_2CZJ_007
NA
HL_4XEJ_1771/B23S/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_90436.1
HL_4XEJ_1781/B23S/1612:1619No text annotation
homologous
HL_7A0S_040
HL_28592.1
HL_4XEJ_2501/B23S/1630A:1635Pseudoknot geometry with 3' bulge
homologous
HL_9DFE_039
HL_49081.1
HL_4XEJ_1801/B23S/1691:1696No text annotation
homologous
HL_7RQB_042
NA
HL_4XEJ_1811/B23S/1712F:1712LNo text annotation
homologous
HL_7RQB_043
NA
HL_4XEJ_1821/B23S/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_4XEJ_1831/B23S/1777:1787No text annotation
homologous
HL_5J7L_178
NA
HL_4XEJ_1841/B23S/1806:1811GNRA
homologous
HL_7RQB_046
NA
HL_4XEJ_1851/B23S/1864:1878GNRA
homologous
HL_7RQB_047
NA
HL_4XEJ_1861/B23S/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_4XEJ_1871/B23S/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_4XEJ_1881/B23S/2027:2036No text annotation
homologous
HL_7RQB_050
NA
HL_4XEJ_1901/B23S/2202B:2202GNo text annotation
geometric
HL_5TBW_004
NA
HL_4XEJ_1911/B23S/2248:2256No text annotation
homologous
HL_4WF9_049
HL_11974.1
HL_4XEJ_1921/B23S/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_4XEJ_2521/B23S/2304:2312No text annotation
homologous
HL_7A0S_076
HL_02452.1
HL_4XEJ_1941/B23S/2324:2331Pseudoknot geometry
homologous
HL_7RQB_056
NA
HL_4XEJ_1951/B23S/2355:2362No text annotation
homologous
HL_7RQB_057
NA
HL_4XEJ_1961/B23S/2374:2379GNRA
homologous
HL_5J7L_191
NA
HL_4XEJ_1971/B23S/2404:2413No text annotation
homologous
HL_7RQB_059
NA
HL_4XEJ_1981/B23S/2471:2479No text annotation
homologous
HL_7RQB_060
NA
HL_4XEJ_1991/B23S/2528:2535No text annotation
homologous
HL_7RQB_061
NA
HL_4XEJ_2001/B23S/2551:2557No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_4XEJ_2011/B23S/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_4XEJ_2021/B23S/2658:2663GNRA
homologous
HL_7RQB_064
NA
HL_4XEJ_2031/B23S/2701:2706No text annotation
homologous
HL_7RQB_065
NA
HL_4XEJ_2041/B23S/2745:2759No text annotation
homologous
HL_7RQB_066
NA
HL_4XEJ_2061/B23S/2819:2827No text annotation
homologous
HL_7RQB_068
NA
HL_4XEJ_2071/B23S/2856:2861GNRA
homologous
HL_7RQB_069
NA
HL_4XEJ_2081/B5S/38:44No text annotation
homologous
HL_5J7L_203
NA
HL_4XEJ_2091/B5S/86:90GNRA
homologous
HL_7A0S_070
HL_34789.1
HL_4XEJ_2101/BIRE/6161:6168No text annotation

Problematic loops

#loop idProblemSequence
HL_4XEJ_002No text annotation
HL_4XEJ_019GNRA with extra cWW
HL_4XEJ_023No text annotation
HL_4XEJ_211No text annotation
HL_4XEJ_030No text annotation
HL_4XEJ_212No text annotation
HL_4XEJ_035No text annotation
HL_4XEJ_214tRNA D-loop
HL_4XEJ_216No text annotation
HL_4XEJ_045No text annotation
HL_4XEJ_217No text annotation
HL_4XEJ_218No text annotation
HL_4XEJ_070No text annotation
HL_4XEJ_220tRNA D-loop
HL_4XEJ_074No text annotation
HL_4XEJ_221No text annotation
HL_4XEJ_084No text annotation
HL_4XEJ_242No text annotation
HL_4XEJ_088No text annotation
HL_4XEJ_094tRNA anticodon loop
HL_4XEJ_223No text annotation
HL_4XEJ_224No text annotation
HL_4XEJ_100No text annotation
HL_4XEJ_102GNRA with extra cWW
HL_4XEJ_225No text annotation
HL_4XEJ_246No text annotation
HL_4XEJ_107No text annotation
HL_4XEJ_111No text annotation
HL_4XEJ_226No text annotation
HL_4XEJ_227No text annotation
HL_4XEJ_140No text annotation
HL_4XEJ_228No text annotation
HL_4XEJ_150No text annotation
HL_4XEJ_229No text annotation
HL_4XEJ_230No text annotation
HL_4XEJ_231No text annotation
HL_4XEJ_179No text annotation
HL_4XEJ_189No text annotation
HL_4XEJ_251No text annotation
HL_4XEJ_193No text annotation
HL_4XEJ_233tRNA anticodon loop
HL_4XEJ_205No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4XEJ_0011/A16S/30:32,
1/A16S/552:553		Single bulged G
homologous
IL_4LFB_001
IL_28408.1
IL_4XEJ_0021/A16S/44:45,
1/A16S/396:398		Single bulged A
homologous
IL_4LFB_002
IL_14190.1
IL_4XEJ_0031/A16S/47:52,
1/A16S/359:361		No text annotation
homologous
IL_4LFB_003
IL_68149.1
IL_4XEJ_0041/A16S/54:56,
1/A16S/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_34520.1
IL_4XEJ_0051/A16S/63:66,
1/A16S/103:104		Multiple bulged bases
homologous
IL_4LFB_005
IL_71421.1
IL_4XEJ_0061/A16S/67:68A,
1/A16S/68Y:102		Isolated non-canonical cWW pair
homologous
IL_4LFB_006
IL_01003.1
IL_4XEJ_0071/A16S/129:131,
1/A16S/231:232		Multiple bulged bases
homologous
IL_4LFB_007
IL_75289.1
IL_4XEJ_0081/A16S/132:136,
1/A16S/227:230		No text annotation
homologous
IL_4LFB_008
IL_60988.1
IL_4XEJ_0091/A16S/148:153,
1/A16S/168:174		tWH-tWH-tHW-tHW
homologous
IL_4LFB_009
IL_00680.1
IL_4XEJ_0111/A16S/186:186B,
1/A16S/186O:191		Isolated non-canonical cWW pair
homologous
IL_4LFB_010
IL_01003.1
IL_4XEJ_0121/A16S/242:247,
1/A16S/277:284		Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.4
IL_4XEJ_0131/A16S/249:252,
1/A16S/274:275		No text annotation
homologous
IL_4LFB_012
IL_22002.1
IL_4XEJ_0141/A16S/292:293,
1/A16S/304:308		C-loop
homologous
IL_6CZR_125
NA
IL_4XEJ_4411/A16S/367:369,
1/A16S/392:393		Single bulged U
geometric
IL_8P9A_396
IL_97561.1
IL_4XEJ_0151/A16S/371:375,
1/A16S/389:390		C-loop
homologous
IL_5J7L_018
NA
IL_4XEJ_3881/A16S/375:376,
1/A16S/387:389		Single bulged G
homologous
IL_4LFB_016
IL_28408.1
IL_4XEJ_0171/A16S/409:416,
1/A16S/427:433		No text annotation
homologous
IL_4LFB_017
IL_62329.1
IL_4XEJ_0181/A16S/446:450,
1/A16S/483:488		6x5 Sarcin-Ricin; G-bulge
geometric
IL_4LFB_018
IL_82100.1
IL_4XEJ_0191/A16S/450:455,
1/A16S/477:483		No text annotation
homologous
IL_4LFB_019
IL_31561.1
IL_4XEJ_0201/A16S/504:511,
1/A16S/540:541		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_11411.1
IL_4XEJ_0211/A16S/515:522,
1/A16S/527:536		No text annotation
IL_4XEJ_0221/A16S/569:575,
1/A16S/880:881		No text annotation
homologous
IL_4LFB_022
IL_20847.1
IL_4XEJ_0231/A16S/580:584,
1/A16S/757:761		tSH-tHW-tHS
homologous
IL_4LFB_023
IL_05821.1
IL_4XEJ_0241/A16S/594:596,
1/A16S/644:645		Major groove platform
homologous
IL_4LFB_024
IL_48076.7
IL_4XEJ_0251/A16S/597:598,
1/A16S/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_73108.1
IL_4XEJ_0261/A16S/605:612,
1/A16S/628:633		No text annotation
homologous
IL_4LFB_026
IL_04211.1
IL_4XEJ_0271/A16S/654:655,
1/A16S/751:754		Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_74641.1
IL_4XEJ_0281/A16S/657:658,
1/A16S/747:749		Major groove platform
homologous
IL_4LFB_028
IL_48076.7
IL_4XEJ_0291/A16S/662:666,
1/A16S/740:743		Tandem non-canonical cWW pairs
homologous
IL_4LFB_029
IL_15225.1
IL_4XEJ_3901/A16S/673:677,
1/A16S/713:717		Triple non-canonical cWW pairs
homologous
IL_5J7L_361
NA
IL_4XEJ_0311/A16S/683:688,
1/A16S/699:707		Kink-turn
homologous
IL_4LFB_031
IL_95727.1
IL_4XEJ_0321/A16S/774:778,
1/A16S/804:805		Left turn
homologous
IL_4LFB_032
IL_29346.3
IL_4XEJ_0331/A16S/779:783,
1/A16S/799:803		tSH-tHW-tHS
homologous
IL_4LFB_033
IL_05821.1
IL_4XEJ_0341/A16S/887:894,
1/A16S/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_84044.1
IL_4XEJ_3911/A16S/922:923,
1/A16S/1393:1395		Single bulged A
homologous
IL_5J7L_039
NA
IL_4XEJ_0361/A16S/925:927,
1/A16S/1390:1391		Single bulged G
homologous
IL_5J7L_040
NA
IL_4XEJ_4421/A16S/933:935,
1/A16S/1380:1384		Minor groove platform
homologous
IL_4LFB_037
IL_61370.1
IL_4XEJ_0381/A16S/953:954,
1/A16S/1226:1228		No text annotation
homologous
IL_6CZR_150
NA
IL_4XEJ_0391/A16S/993:997,
1/A16S/1044:1045		Minor groove platform
geometric
IL_4LFB_039
IL_61370.1
IL_4XEJ_0411/A16S/1048:1050,
1/A16S/1208:1209		Single bulged U
homologous
IL_5J7L_046
NA
IL_4XEJ_0421/A16S/1052:1056,
1/A16S/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_4XEJ_0431/A16S/1057:1058,
1/A16S/1199:1203		Minor groove platform
homologous
IL_4LFB_045
IL_24264.1
IL_4XEJ_0441/A16S/1060:1061,
1/A16S/1195:1197		Single bulged U
homologous
IL_4LFB_046
IL_97561.1
IL_4XEJ_0451/A16S/1061:1063,
1/A16S/1193:1195		Isolated non-canonical cWW pair
geometric
IL_3RG5_002
IL_68118.1
IL_4XEJ_0491/A16S/1124:1127,
1/A16S/1145:1149		No text annotation
IL_4XEJ_4431/A16S/1124:1128,
1/A16S/1143:1149		No text annotation
homologous
IL_4LFB_048
IL_89862.1
IL_4XEJ_0501/A16S/1127:1128,
1/A16S/1143:1145		Single stack bend
geometric
IL_5TBW_070
NA
IL_4XEJ_0511/A16S/1128:1132,
1/A16S/1142:1143		Minor groove platform
homologous
IL_4LFB_049
IL_87975.1
IL_4XEJ_0521/A16S/1158:1161,
1/A16S/1175:1181		No text annotation
geometric
IL_5J7L_053
NA
IL_4XEJ_0531/A16S/1247:1253,
1/A16S/1284:1290		No text annotation
homologous
IL_4LFB_051
IL_12056.1
IL_4XEJ_0541/A16S/1255:1258,
1/A16S/1277:1282		180 degree turn
homologous
IL_4LFB_052
IL_08849.1
IL_4XEJ_0551/A16S/1259:1262,
1/A16S/1273:1276		Double sheared
geometric
IL_5J7L_256
NA
IL_4XEJ_3951/A16S/1303:1308,
1/A16S/1329:1334		No text annotation
homologous
IL_4LFB_055
IL_57885.1
IL_4XEJ_0581/A16S/1399:1401,
1/A16S/1501:1504		No text annotation
geometric
IL_4V88_463
NA
IL_4XEJ_0591/A16S/1401:1404,
1/A16S/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_4XEJ_0601/A16S/1405:1407,
1/A16S/1494:1496		Isolated non-canonical cWW pair
geometric
IL_5MWI_002
NA
IL_4XEJ_0611/A16S/1407:1409,
1/A16S/1491:1494		Isolated non-canonical cWW pair
geometric
IL_4V88_455
NA
IL_4XEJ_0621/A16S/1412:1414,
1/A16S/1486:1488		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
NA
IL_4XEJ_0631/A16S/1416:1419,
1/A16S/1481:1484		Double sheared
homologous
IL_5J7L_062
NA
IL_4XEJ_0641/A16S/1431:1435,
1/A16S/1466:1469		UAA/GAN variation
homologous
IL_4LFB_062
IL_77691.6
IL_4XEJ_4441/A16S/1435:1437,
1/A16S/1464:1466		Isolated non-canonical cWW pair
homologous
IL_6CZR_171
NA
IL_4XEJ_0661/A16S/1440:1440E,
1/A16S/1440N:1461		No text annotation
homologous
IL_4LFB_064
IL_93811.1
IL_4XEJ_0671/A23S/24:30,
1/A23S/510:516		Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA
IL_4XEJ_0681/A23S/36:37,
1/A23S/442:444		Single bulged A
homologous
IL_7RQB_002
NA
IL_4XEJ_4451/A23S/43:44,
1/A23S/434:436		Minor groove platform
homologous
IL_9DFE_348
IL_34520.1
IL_4XEJ_0701/A23S/81:85,
1/A23S/97:105		Kink-turn
homologous
IL_7RQB_004
NA
IL_4XEJ_0711/A23S/183:184,
1/A23S/212:214		Single stack bend
homologous
IL_7RQB_005
NA
IL_4XEJ_0721/A23S/188:194,
1/A23S/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_006
NA
IL_4XEJ_0741/A23S/239:245,
1/A23S/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA
IL_4XEJ_0751/A23S/270I:270K,
1/A23S/270N:270Q		No text annotation
IL_4XEJ_3981/A23S/271:271,
1/A23S/357:357		Major groove platform
homologous
IL_9DFE_008
IL_48076.7
IL_4XEJ_0781/A23S/271S:283,
1/A23S/357:357C		tSH-tHW
homologous
IL_7RQB_011
NA
IL_4XEJ_0771/A23S/271L:271S,
1/A23S/357C:357F		No text annotation
IL_4XEJ_3991/A23S/271:283,
1/A23S/357:357		No text annotation
IL_4XEJ_0791/A23S/287:290,
1/A23S/350:353		Isolated tHS basepair with bulges
homologous
IL_7RQB_012
NA
IL_4XEJ_0801/A23S/293:295,
1/A23S/343:347		No text annotation
homologous
IL_7RQB_013
NA
IL_4XEJ_0811/A23S/481:484,
1/A23S/496:509		No text annotation
homologous
IL_7RQB_014
NA
IL_4XEJ_0821/A23S/564:566,
1/A23S/575:577		Isolated non-canonical cWW pair
homologous
IL_5J7L_257
NA
IL_4XEJ_0851/A23S/606:610,
1/A23S/618:622		AAA cross-strand stack
homologous
IL_7RQB_016
NA
IL_4XEJ_0861/A23S/672:674,
1/A23S/806:808		Isolated non-canonical cWW pair
homologous
IL_4WF9_020
IL_01003.1
IL_4XEJ_0871/A23S/674:678,
1/A23S/799:806		tHW-tHW cross-strand stack
geometric
IL_4WF9_021
IL_73855.1
IL_4XEJ_0881/A23S/697:698,
1/A23S/763:765		Single bulged A
geometric
IL_7RQB_019
NA
IL_4XEJ_0891/A23S/702:703,
1/A23S/728:730		Single bulged G
geometric
IL_7RQB_020
NA
IL_4XEJ_0901/A23S/703:707,
1/A23S/724:728		Triple sheared
homologous
IL_7RQB_021
NA
IL_4XEJ_0911/A23S/738:741,
1/A23S/756:758		Major groove platform with extra cWW
homologous
IL_7RQB_022
NA
IL_4XEJ_0921/A23S/775:777,
1/A23S/787:791		Multiple bulged bases
geometric
IL_7A0S_021
IL_89509.1
IL_4XEJ_0931/A23S/837:838,
1/A23S/940:942		Single stack bend
homologous
IL_4WF9_028
IL_15011.1
IL_4XEJ_0941/A23S/844:846,
1/A23S/931:934		Intercalated cWW
homologous
IL_7RQB_025
NA
IL_4XEJ_0951/A23S/846:850,
1/A23S/928:931		No text annotation
geometric
IL_7RQB_026
NA
IL_4XEJ_0961/A23S/858:862,
1/A23S/915:919		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7RQB_027
NA
IL_4XEJ_4001/A23S/858:863,
1/A23S/913:919		No text annotation
IL_4XEJ_0971/A23S/862:863,
1/A23S/913:915		Minor groove platform
homologous
IL_7A0S_028
IL_34520.1
IL_4XEJ_0981/A23S/864:868,
1/A23S/909:912		C-loop
geometric
IL_7RQB_029
NA
IL_4XEJ_1011/A23S/875:877,
1/A23S/899:902		Minor groove platform with extra cWW
geometric
IL_7RQB_031
NA
IL_4XEJ_1021/A23S/877:879,
1/A23S/898:899		Minor groove platform
homologous
IL_7RQB_032
NA
IL_4XEJ_1031/A23S/880:881,
1/A23S/895:897		Single bulged A
homologous
IL_7RQB_033
NA
IL_4XEJ_1041/A23S/952:954,
1/A23S/963:965		No text annotation
homologous
IL_7RQB_034
NA
IL_4XEJ_1051/A23S/994:996,
1/A23S/1159:1160		Single bulged C
homologous
IL_5J7L_276
NA
IL_4XEJ_1061/A23S/998:1002,
1/A23S/1153:1157		UAA/GAN
homologous
IL_7RQB_036
NA
IL_4XEJ_1071/A23S/1004:1011,
1/A23S/1150:1151		SSU/LSU pseudoknot
homologous
IL_7RQB_037
NA
IL_4XEJ_1081/A23S/1011:1013,
1/A23S/1149:1150		Single bulged U
geometric
IL_7RQB_038
NA
IL_4XEJ_1091/A23S/1018:1024,
1/A23S/1140:1144		Kink-turn related
geometric
IL_4WF9_039
IL_57188.6
IL_4XEJ_1101/A23S/1024:1030,
1/A23S/1124:1140		No text annotation
geometric
IL_7RQB_040
NA
IL_4XEJ_1111/A23S/1031:1034,
1/A23S/1121:1123		Isolated non-canonical cWW pair
homologous
IL_4WF9_041
IL_30229.1
IL_4XEJ_1131/A23S/1043:1051,
1/A23S/1108:1112		Kink-turn
homologous
IL_5J7L_284
NA
IL_4XEJ_4461/A23S/1059:1062,
1/A23S/1076:1079		No text annotation
IL_4XEJ_1161/A23S/1196:1198,
1/A23S/1247:1250		Isolated cWS basepair
homologous
IL_7RQB_045
NA
IL_4XEJ_1171/A23S/1202:1206,
1/A23S/1240:1243		No text annotation
homologous
IL_7RQB_046
NA
IL_4XEJ_1181/A23S/1208:1215,
1/A23S/1234:1238		Kink-turn
homologous
IL_7RQB_047
NA
IL_4XEJ_1191/A23S/1219:1220,
1/A23S/1229:1230		Single bulged A
homologous
IL_7RQB_048
NA
IL_4XEJ_1201/A23S/1262:1269,
1/A23S/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
NA
IL_4XEJ_1211/A23S/1319:1323,
1/A23S/1331:1333		C-loop
homologous
IL_7RQB_051
NA
IL_4XEJ_1221/A23S/1351:1355,
1/A23S/1376:1380		UAA/GAN
homologous
IL_7RQB_052
NA
IL_4XEJ_1231/A23S/1357:1361,
1/A23S/1370:1374		tSH-tHW-tHS
homologous
IL_4WF9_052
IL_05821.1
IL_4XEJ_1241/A23S/1415:1421,
1/A23S/1577:1587		No text annotation
IL_4XEJ_1251/A23S/1433:1435,
1/A23S/1557:1560		Isolated tWW turn
homologous
IL_7RQB_056
NA
IL_4XEJ_1261/A23S/1437:1440,
1/A23S/1551:1555		tSH-tHW
homologous
IL_7RQB_057
NA
IL_4XEJ_1271/A23S/1448:1449,
1/A23S/1462:1463		Single stack bend
homologous
IL_7RQB_058
NA
IL_4XEJ_1291/A23S/1468M:1483,
1/A23S/1506:1506E		No text annotation
homologous
IL_7RQB_061
NA
IL_4XEJ_1281/A23S/1468A:1468E,
1/A23S/1506M:1506P		UAA/GAN variation
homologous
IL_7RQB_060
NA
IL_4XEJ_1301/A23S/1489:1491,
1/A23S/1499:1500		Single bulged A
homologous
IL_7RQB_062
NA
IL_4XEJ_1311/A23S/1526:1530,
1/A23S/1541:1546		No text annotation
homologous
IL_7RQB_063
NA
IL_4XEJ_1321/A23S/1651:1656,
1/A23S/2004:2006		No text annotation
homologous
IL_7RQB_064
NA
IL_4XEJ_1331/A23S/1663:1665,
1/A23S/1995:1997		Isolated tWW turn
homologous
IL_7RQB_065
NA
IL_4XEJ_1341/A23S/1666:1669,
1/A23S/1993:1994		Major groove platform; stack outside cWW
homologous
IL_5J7L_306
NA
IL_4XEJ_4041/A23S/1666:1674,
1/A23S/1990:1994		No text annotation
homologous
IL_9DFE_066
IL_80252.1
IL_4XEJ_1351/A23S/1669:1674,
1/A23S/1990:1993		Intercalated tWH
geometric
IL_7A0S_062
IL_28217.1
IL_4XEJ_1361/A23S/1686:1691,
1/A23S/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
NA
IL_4XEJ_1371/A23S/1770:1771,
1/A23S/1980:1982		Single bulged A
homologous
IL_7RQB_069
NA
IL_4XEJ_1381/A23S/1798:1804,
1/A23S/1813:1821		Kink-turn related
homologous
IL_7RQB_070
NA
IL_4XEJ_1391/A23S/1837:1840,
1/A23S/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_7RQB_071
NA
IL_4XEJ_4471/A23S/1841:1842,
1/A23S/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_4XEJ_1411/A23S/1846:1849,
1/A23S/1893:1894		Minor groove platform
homologous
IL_7RQB_073
NA
IL_4XEJ_1421/A23S/1851:1855,
1/A23S/1887:1891		UAA/GAN with extra stack
homologous
IL_4WF9_073
IL_89021.3
IL_4XEJ_1431/A23S/1856:1860,
1/A23S/1882:1886		Triple sheared
homologous
IL_7RQB_075
NA
IL_4XEJ_1441/A23S/1933:1945,
1/A23S/1961:1967		No text annotation
IL_4XEJ_1451/A23S/2050:2052,
1/A23S/2617:2618		Major groove platform
homologous
IL_5J7L_320
NA
IL_4XEJ_1471/A23S/2067:2069,
1/A23S/2442:2443		Single bulged U
homologous
IL_7A0S_075
IL_97561.1
IL_4XEJ_1481/A23S/2070:2071,
1/A23S/2438:2441		Minor groove platform
homologous
IL_4WF9_081
IL_34520.1
IL_4XEJ_1491/A23S/2081:2083,
1/A23S/2236:2239		Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_4XEJ_1501/A23S/2085:2087,
1/A23S/2232:2234		No text annotation
homologous
IL_7RQB_083
NA
IL_4XEJ_1531/A23S/2108:2110,
1/A23S/2179:2181		Isolated non-canonical cWW pair
geometric
IL_5J7L_257
NA
IL_4XEJ_4061/A23S/2108:2120,
1/A23S/2178:2181		No text annotation
IL_4XEJ_1541/A23S/2110:2120,
1/A23S/2178:2179		No text annotation
homologous
IL_3U4M_002
IL_32056.1
IL_4XEJ_1581/A23S/2297:2299,
1/A23S/2317:2321		Isolated tHS basepair with bulges
geometric
IL_4V9F_080
IL_14250.1
IL_4XEJ_1601/A23S/2350:2353,
1/A23S/2364:2367		Double sheared
homologous
IL_7RQB_089
NA
IL_4XEJ_4081/A23S/2401:2403,
1/A23S/2414:2415		Single bulged U
homologous
IL_5J7L_334
NA
IL_4XEJ_1631/A23S/2453:2454,
1/A23S/2498:2500		Single stack bend
geometric
IL_7RQB_091
NA
IL_4XEJ_1641/A23S/2454:2455,
1/A23S/2496:2498		Major groove platform
homologous
IL_7RQB_092
NA
IL_4XEJ_1651/A23S/2457:2459,
1/A23S/2493:2494		Major groove platform
homologous
IL_7A0S_085
IL_48076.7
IL_4XEJ_1661/A23S/2459:2461,
1/A23S/2489:2493		Major groove minor groove platform with extra cWW
geometric
IL_7A0S_086
IL_36931.1
IL_4XEJ_1671/A23S/2466:2470,
1/A23S/2480:2484		Triple sheared
homologous
IL_7RQB_095
NA
IL_4XEJ_1681/A23S/2507:2508,
1/A23S/2580:2582		Major groove platform
homologous
IL_4WF9_094
IL_46637.1
IL_4XEJ_1691/A23S/2510:2512,
1/A23S/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_5J7L_340
NA
IL_4XEJ_4491/A23S/2512:2513,
1/A23S/2571:2574		No text annotation
homologous
IL_5J7L_341
NA
IL_4XEJ_1711/A23S/2522:2523,
1/A23S/2540:2543		Major groove platform with intercalation
homologous
IL_7RQB_099
NA
IL_4XEJ_1721/A23S/2591:2592,
1/A23S/2601:2603		Single bulged A
homologous
IL_7RQB_101
NA
IL_4XEJ_1741/A23S/2636:2640,
1/A23S/2774:2782		tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_4XEJ_1761/A23S/2652:2658,
1/A23S/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7RQB_103
NA
IL_4XEJ_1771/A23S/2680:2684,
1/A23S/2725:2727		C-loop
homologous
IL_7RQB_104
NA
IL_4XEJ_1781/A23S/2687:2691,
1/A23S/2718:2722		No text annotation
homologous
IL_7RQB_105
NA
IL_4XEJ_1791/A23S/2695:2696,
1/A23S/2711:2714		Multiple bulged bases
homologous
IL_7RQB_106
NA
IL_4XEJ_1801/A23S/2737:2742,
1/A23S/2762:2767		UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_91079.1
IL_4XEJ_1821/A23S/2838:2839,
1/A23S/2878:2880		Single bulged C
homologous
IL_7RQB_108
NA
IL_4XEJ_4501/A23S/2843:2846,
1/A23S/2870:2874		No text annotation
homologous
IL_9DFE_108
IL_25873.1
IL_4XEJ_1841/A23S/2847:2852,
1/A23S/2865:2869		tHS double platform
geometric
IL_7RQB_110
NA
IL_4XEJ_1861/A5S/17:18,
1/A5S/65:67		Major groove intercalation
homologous
IL_7RQB_111
NA
IL_4XEJ_1871/A5S/23:28,
1/A5S/56:60		No text annotation
homologous
IL_7RQB_112
NA
IL_4XEJ_4511/A5S/30:31,
1/A5S/51:54		No text annotation
homologous
IL_8P9A_366
IL_87975.1
IL_4XEJ_1891/A5S/33:38,
1/A5S/44:49		No text annotation
homologous
IL_7A0S_105
NA
IL_4XEJ_1901/A5S/71:79,
1/A5S/97:105		Bacterial 5S Loop E
homologous
IL_7RQB_115
NA
IL_4XEJ_4521/AIRE/6153:6159,
1/AIRE/6170:6175		No text annotation
IL_4XEJ_4111/B16S/30:32,
1/B16S/552:553		Single bulged G
homologous
IL_4LFB_001
IL_28408.1
IL_4XEJ_1941/B16S/44:45,
1/B16S/396:398		Single bulged A
homologous
IL_4LFB_002
IL_14190.1
IL_4XEJ_1951/B16S/47:52,
1/B16S/359:361		No text annotation
homologous
IL_4LFB_003
IL_68149.1
IL_4XEJ_1961/B16S/54:56,
1/B16S/356:357		Minor groove platform
homologous
IL_6CZR_116
NA
IL_4XEJ_1981/B16S/63:66,
1/B16S/103:104		Multiple bulged bases
geometric
IL_4LFB_005
IL_71421.1
IL_4XEJ_1991/B16S/67:68A,
1/B16S/68Y:102		Isolated non-canonical cWW pair
homologous
IL_4LFB_006
IL_01003.1
IL_4XEJ_2011/B16S/129:131,
1/B16S/231:232		Multiple bulged bases
homologous
IL_4LFB_007
IL_75289.1
IL_4XEJ_2021/B16S/132:136,
1/B16S/227:230		No text annotation
homologous
IL_4LFB_008
IL_60988.1
IL_4XEJ_4531/B16S/148:153,
1/B16S/168:174		tWH-tWH-tHW-tHW
homologous
IL_4LFB_009
IL_00680.1
IL_4XEJ_2041/B16S/186:186B,
1/B16S/186O:191		Isolated non-canonical cWW pair
homologous
IL_4LFB_010
IL_01003.1
IL_4XEJ_2051/B16S/242:247,
1/B16S/277:284		No text annotation
IL_4XEJ_4541/B16S/242:248,
1/B16S/276:284		No text annotation
IL_4XEJ_2061/B16S/249:252,
1/B16S/274:275		No text annotation
homologous
IL_4LFB_012
IL_22002.1
IL_4XEJ_2081/B16S/292:293,
1/B16S/304:308		C-loop
homologous
IL_4LFB_013
IL_06671.1
IL_4XEJ_2091/B16S/367:369,
1/B16S/392:393		Single bulged U
homologous
IL_4LFB_014
IL_97561.1
IL_4XEJ_2101/B16S/371:375,
1/B16S/389:390		C-loop
geometric
IL_5J7L_018
NA
IL_4XEJ_4551/B16S/371:376,
1/B16S/387:390		No text annotation
IL_4XEJ_2111/B16S/375:376,
1/B16S/387:389		Single bulged G
homologous
IL_4LFB_016
IL_28408.1
IL_4XEJ_2121/B16S/409:416,
1/B16S/427:433		No text annotation
homologous
IL_4LFB_017
IL_62329.1
IL_4XEJ_2131/B16S/446:450,
1/B16S/483:488		6x5 Sarcin-Ricin; G-bulge
homologous
IL_4LFB_018
IL_82100.1
IL_4XEJ_2141/B16S/450:455,
1/B16S/477:483		No text annotation
geometric
IL_4LFB_019
IL_31561.1
IL_4XEJ_2151/B16S/504:511,
1/B16S/540:541		SSU/LSU pseudoknot
homologous
IL_5J7L_024
NA
IL_4XEJ_2161/B16S/515:521,
1/B16S/528:536		Kink-turn related
homologous
IL_4LFB_021
IL_52042.1
IL_4XEJ_2171/B16S/569:575,
1/B16S/880:881		No text annotation
homologous
IL_4LFB_022
IL_20847.1
IL_4XEJ_2181/B16S/580:584,
1/B16S/757:761		tSH-tHW-tHS
homologous
IL_4LFB_023
IL_05821.1
IL_4XEJ_2191/B16S/594:596,
1/B16S/644:645		Major groove platform
geometric
IL_4LFB_024
IL_48076.7
IL_4XEJ_4151/B16S/594:598,
1/B16S/640:645		No text annotation
IL_4XEJ_2201/B16S/596:598,
1/B16S/640:644		Major groove minor groove platform with extra cWW
geometric
IL_4WF9_012
IL_46387.2
IL_4XEJ_2211/B16S/605:612,
1/B16S/628:633		No text annotation
homologous
IL_4LFB_026
IL_04211.1
IL_4XEJ_2221/B16S/654:655,
1/B16S/751:754		Major groove platform; stack outside cWW
homologous
IL_5J7L_031
NA
IL_4XEJ_4161/B16S/657:658,
1/B16S/747:749		Major groove platform
homologous
IL_4LFB_028
IL_48076.7
IL_4XEJ_2241/B16S/662:666,
1/B16S/740:743		Tandem non-canonical cWW pairs
homologous
IL_4LFB_029
IL_15225.1
IL_4XEJ_4181/B16S/673:677,
1/B16S/713:717		Triple non-canonical cWW pairs
homologous
IL_5J7L_361
NA
IL_4XEJ_2261/B16S/683:688,
1/B16S/699:707		Kink-turn
homologous
IL_4LFB_031
IL_95727.1
IL_4XEJ_2281/B16S/774:778,
1/B16S/804:805		Left turn
homologous
IL_5J7L_036
NA
IL_4XEJ_2291/B16S/779:783,
1/B16S/799:803		tSH-tHW-tHS
homologous
IL_5J7L_037
NA
IL_4XEJ_2301/B16S/887:894,
1/B16S/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_84044.1
IL_4XEJ_4561/B16S/922:923,
1/B16S/1393:1395		Single bulged A
homologous
IL_4LFB_035
IL_14190.1
IL_4XEJ_2311/B16S/925:927,
1/B16S/1390:1391		Single bulged G
homologous
IL_6CZR_148
NA
IL_4XEJ_2331/B16S/933:935,
1/B16S/1380:1384		Minor groove platform
homologous
IL_4LFB_037
IL_61370.1
IL_4XEJ_4571/B16S/950:954,
1/B16S/1226:1231		No text annotation
IL_4XEJ_2341/B16S/952:954,
1/B16S/1226:1229		Isolated non-canonical cWW pair
geometric
IL_4KYY_002
NA
IL_4XEJ_2351/B16S/993:997,
1/B16S/1044:1045		Minor groove platform
geometric
IL_4LFB_039
IL_61370.1
IL_4XEJ_4231/B16S/1047:1050,
1/B16S/1208:1210		No text annotation
homologous
IL_4LFB_043
NA
IL_4XEJ_2381/B16S/1048:1050,
1/B16S/1208:1209		Single bulged U
homologous
IL_4LFB_042
IL_97561.1
IL_4XEJ_2391/B16S/1052:1056,
1/B16S/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_4XEJ_2401/B16S/1057:1058,
1/B16S/1199:1203		Minor groove platform
homologous
IL_4LFB_045
IL_24264.1
IL_4XEJ_4581/B16S/1060:1061,
1/B16S/1195:1197		Single bulged U
homologous
IL_4LFB_046
IL_97561.1
IL_4XEJ_2421/B16S/1061:1063,
1/B16S/1193:1195		Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_68118.1
IL_4XEJ_2451/B16S/1124:1127,
1/B16S/1145:1149		No text annotation
IL_4XEJ_2461/B16S/1127:1128,
1/B16S/1143:1145		Single stack bend
geometric
IL_5TBW_070
NA
IL_4XEJ_2471/B16S/1128:1132,
1/B16S/1142:1143		Minor groove platform
geometric
IL_4LFB_049
IL_87975.1
IL_4XEJ_2491/B16S/1158:1161,
1/B16S/1175:1181		No text annotation
homologous
IL_4LFB_050
IL_32376.1
IL_4XEJ_2511/B16S/1247:1253,
1/B16S/1284:1290		No text annotation
homologous
IL_4LFB_051
IL_12056.1
IL_4XEJ_2521/B16S/1255:1258,
1/B16S/1277:1282		180 degree turn
homologous
IL_4LFB_052
IL_08849.1
IL_4XEJ_2531/B16S/1259:1262,
1/B16S/1273:1276		Double sheared
geometric
IL_5J7L_256
NA
IL_4XEJ_4591/B16S/1303:1308,
1/B16S/1329:1334		No text annotation
homologous
IL_4LFB_055
IL_57885.1
IL_4XEJ_2551/B16S/1399:1401,
1/B16S/1501:1504		No text annotation
geometric
IL_4V88_463
NA
IL_4XEJ_2561/B16S/1401:1404,
1/B16S/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_4XEJ_2571/B16S/1405:1407,
1/B16S/1494:1496		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_4XEJ_2581/B16S/1407:1409,
1/B16S/1491:1494		No text annotation
IL_4XEJ_4271/B16S/1407:1410,
1/B16S/1490:1494		No text annotation
geometric
IL_2O3V_003
IL_34618.1
IL_4XEJ_4601/B16S/1412:1414,
1/B16S/1486:1488		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
NA
IL_4XEJ_2601/B16S/1416:1419,
1/B16S/1481:1484		Double sheared
homologous
IL_5J7L_062
NA
IL_4XEJ_2611/B16S/1431:1435,
1/B16S/1466:1469		UAA/GAN variation
geometric
IL_4LFB_062
IL_77691.6
IL_4XEJ_2621/B16S/1435:1437,
1/B16S/1464:1466		Isolated non-canonical cWW pair
homologous
IL_6CZR_171
NA
IL_4XEJ_2631/B16S/1440:1440E,
1/B16S/1440N:1461		No text annotation
homologous
IL_4LFB_064
IL_93811.1
IL_4XEJ_2641/B23S/24:30,
1/B23S/510:516		Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA
IL_4XEJ_2651/B23S/36:37,
1/B23S/442:444		Single bulged A
homologous
IL_7A0S_002
IL_14190.1
IL_4XEJ_4611/B23S/43:44,
1/B23S/434:436		Minor groove platform
homologous
IL_9DFE_348
IL_34520.1
IL_4XEJ_4281/B23S/56:76,
1/B23S/110:114		No text annotation
IL_4XEJ_2681/B23S/81:85,
1/B23S/97:105		Kink-turn
homologous
IL_7RQB_004
NA
IL_4XEJ_2701/B23S/183:184,
1/B23S/212:214		Single stack bend
homologous
IL_7RQB_005
NA
IL_4XEJ_2711/B23S/188:194,
1/B23S/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_006
NA
IL_4XEJ_2721/B23S/239:245,
1/B23S/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_007
NA
IL_4XEJ_2731/B23S/271F:271G,
1/B23S/357K:357M		Major groove platform
homologous
IL_7RQB_009
NA
IL_4XEJ_4621/B23S/271S:283,
1/B23S/357:357C		No text annotation
homologous
IL_9DFE_009
IL_74317.1
IL_4XEJ_2741/B23S/271L:271S,
1/B23S/357C:357F		No text annotation
IL_4XEJ_2761/B23S/287:290,
1/B23S/350:353		Isolated tHS basepair with bulges
homologous
IL_7RQB_012
NA
IL_4XEJ_2771/B23S/293:295,
1/B23S/343:347		No text annotation
homologous
IL_7RQB_013
NA
IL_4XEJ_2791/B23S/481:484,
1/B23S/496:509		No text annotation
homologous
IL_7RQB_014
NA
IL_4XEJ_2801/B23S/564:566,
1/B23S/575:577		No text annotation
homologous
IL_7RQB_015
NA
IL_4XEJ_2821/B23S/606:610,
1/B23S/618:622		AAA cross-strand stack
homologous
IL_7RQB_016
NA
IL_4XEJ_2841/B23S/672:674,
1/B23S/806:808		No text annotation
homologous
IL_7RQB_017
NA
IL_4XEJ_2851/B23S/674:678,
1/B23S/799:806		tHW-tHW cross-strand stack
geometric
IL_7A0S_015
IL_73855.1
IL_4XEJ_2871/B23S/697:698,
1/B23S/763:765		Single bulged A
homologous
IL_7RQB_019
NA
IL_4XEJ_2881/B23S/702:703,
1/B23S/728:730		Single bulged G
homologous
IL_7RQB_020
NA
IL_4XEJ_2891/B23S/703:707,
1/B23S/724:728		Triple sheared
geometric
IL_7RQB_021
NA
IL_4XEJ_2901/B23S/738:741,
1/B23S/756:758		Major groove platform with extra cWW
homologous
IL_7RQB_022
NA
IL_4XEJ_2911/B23S/775:777,
1/B23S/787:791		Multiple bulged bases
homologous
IL_7A0S_021
IL_89509.1
IL_4XEJ_2921/B23S/837:838,
1/B23S/940:942		Single stack bend
homologous
IL_7RQB_024
NA
IL_4XEJ_2931/B23S/844:846,
1/B23S/931:934		Intercalated cWW
geometric
IL_7RQB_025
NA
IL_4XEJ_2941/B23S/846:850,
1/B23S/928:931		No text annotation
homologous
IL_7RQB_026
NA
IL_4XEJ_2951/B23S/858:862,
1/B23S/915:919		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_4V9F_033
IL_38862.5
IL_4XEJ_4291/B23S/858:863,
1/B23S/913:919		No text annotation
IL_4XEJ_2961/B23S/862:863,
1/B23S/913:915		Minor groove platform
homologous
IL_7A0S_028
IL_34520.1
IL_4XEJ_2971/B23S/864:868,
1/B23S/909:912		C-loop
homologous
IL_7RQB_029
NA
IL_4XEJ_2991/B23S/875:877,
1/B23S/899:902		Minor groove platform with extra cWW
homologous
IL_7RQB_031
NA
IL_4XEJ_3001/B23S/877:879,
1/B23S/898:899		Minor groove platform
geometric
IL_4LFB_004
IL_34520.1
IL_4XEJ_4631/B23S/880:881,
1/B23S/895:897		Single bulged A
homologous
IL_9DFE_032
IL_14190.1
IL_4XEJ_3021/B23S/952:954,
1/B23S/963:965		No text annotation
homologous
IL_7RQB_034
NA
IL_4XEJ_3031/B23S/994:996,
1/B23S/1159:1160		Single bulged C
homologous
IL_7RQB_035
NA
IL_4XEJ_3041/B23S/998:1002,
1/B23S/1153:1157		UAA/GAN
homologous
IL_7RQB_036
NA
IL_4XEJ_3051/B23S/1004:1011,
1/B23S/1150:1151		SSU/LSU pseudoknot
homologous
IL_7RQB_037
NA
IL_4XEJ_3061/B23S/1011:1013,
1/B23S/1149:1150		Single bulged U
geometric
IL_5J7L_279
NA
IL_4XEJ_3091/B23S/1018:1024,
1/B23S/1140:1144		Kink-turn related
homologous
IL_4WF9_039
IL_57188.6
IL_4XEJ_3101/B23S/1024:1030,
1/B23S/1124:1140		No text annotation
geometric
IL_7RQB_040
NA
IL_4XEJ_3111/B23S/1031:1034,
1/B23S/1121:1123		Isolated non-canonical cWW pair
homologous
IL_4WF9_041
IL_30229.1
IL_4XEJ_3121/B23S/1043:1051,
1/B23S/1108:1112		Kink-turn
homologous
IL_5J7L_284
NA
IL_4XEJ_4641/B23S/1059:1062,
1/B23S/1076:1079		No text annotation
IL_4XEJ_3141/B23S/1196:1198,
1/B23S/1247:1250		Isolated cWS basepair
homologous
IL_7RQB_045
NA
IL_4XEJ_3151/B23S/1202:1206,
1/B23S/1240:1243		No text annotation
homologous
IL_7RQB_046
NA
IL_4XEJ_3161/B23S/1208:1215,
1/B23S/1234:1238		Kink-turn
homologous
IL_7RQB_047
NA
IL_4XEJ_3171/B23S/1219:1220,
1/B23S/1229:1230		Single bulged A
homologous
IL_7RQB_048
NA
IL_4XEJ_3181/B23S/1262:1269,
1/B23S/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_049
NA
IL_4XEJ_3191/B23S/1310:1313,
1/B23S/1603:1604		Major groove platform; stack outside cWW
homologous
IL_4WF9_049
IL_74641.1
IL_4XEJ_4651/B23S/1319:1323,
1/B23S/1331:1333		C-loop
homologous
IL_9DFE_050
IL_63596.12
IL_4XEJ_3211/B23S/1351:1355,
1/B23S/1376:1380		UAA/GAN
homologous
IL_7RQB_052
NA
IL_4XEJ_3221/B23S/1357:1361,
1/B23S/1370:1374		tSH-tHW-tHS
homologous
IL_4WF9_052
IL_05821.1
IL_4XEJ_3231/B23S/1415:1416,
1/B23S/1582:1587		No text annotation
homologous
IL_9DFE_053
IL_52564.1
IL_4XEJ_3241/B23S/1417:1421,
1/B23S/1577:1581		UAA/GAN
homologous
IL_5J7L_295
NA
IL_4XEJ_3251/B23S/1433:1435,
1/B23S/1557:1560		Isolated tWW turn
homologous
IL_7RQB_056
NA
IL_4XEJ_3261/B23S/1437:1440,
1/B23S/1551:1555		tSH-tHW
homologous
IL_7RQB_057
NA
IL_4XEJ_3271/B23S/1448:1449,
1/B23S/1462:1463		Single stack bend
homologous
IL_7RQB_058
NA
IL_4XEJ_3301/B23S/1468M:1483,
1/B23S/1506:1506E		No text annotation
homologous
IL_7RQB_061
NA
IL_4XEJ_3281/B23S/1468A:1468E,
1/B23S/1506M:1506P		UAA/GAN variation
homologous
IL_7RQB_060
NA
IL_4XEJ_3311/B23S/1489:1491,
1/B23S/1499:1500		Single bulged A
homologous
IL_7RQB_062
NA
IL_4XEJ_3321/B23S/1526:1530,
1/B23S/1541:1546		No text annotation
homologous
IL_7RQB_063
NA
IL_4XEJ_3331/B23S/1651:1656,
1/B23S/2004:2006		No text annotation
homologous
IL_5J7L_304
NA
IL_4XEJ_3341/B23S/1663:1665,
1/B23S/1995:1997		Isolated tWW turn
homologous
IL_7RQB_065
NA
IL_4XEJ_3351/B23S/1666:1669,
1/B23S/1993:1994		Major groove platform; stack outside cWW
homologous
IL_5J7L_306
NA
IL_4XEJ_4321/B23S/1666:1674,
1/B23S/1990:1994		No text annotation
homologous
IL_9DFE_066
IL_80252.1
IL_4XEJ_3361/B23S/1669:1674,
1/B23S/1990:1993		Intercalated tWH
geometric
IL_7A0S_062
IL_28217.1
IL_4XEJ_3371/B23S/1686:1691,
1/B23S/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
NA
IL_4XEJ_3381/B23S/1770:1771,
1/B23S/1980:1982		Single bulged A
homologous
IL_7RQB_069
NA
IL_4XEJ_3391/B23S/1798:1804,
1/B23S/1813:1821		Kink-turn related
homologous
IL_7RQB_070
NA
IL_4XEJ_3401/B23S/1837:1840,
1/B23S/1902:1903		Minor groove platform, major groove intercalation
geometric
IL_7RQB_071
NA
IL_4XEJ_4661/B23S/1841:1842,
1/B23S/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_4XEJ_3421/B23S/1846:1849,
1/B23S/1893:1894		Minor groove platform
homologous
IL_7RQB_073
NA
IL_4XEJ_3431/B23S/1851:1855,
1/B23S/1887:1891		UAA/GAN with extra stack
homologous
IL_7RQB_074
NA
IL_4XEJ_3441/B23S/1856:1860,
1/B23S/1882:1886		Triple sheared
homologous
IL_7RQB_075
NA
IL_4XEJ_3451/B23S/1933:1934,
1/B23S/1964:1967		Bulged stacked bases
homologous
IL_5J7L_318
NA
IL_4XEJ_3461/B23S/1934:1945,
1/B23S/1961:1964		No text annotation
geometric
IL_4WF9_077
IL_84014.1
IL_4XEJ_3471/B23S/2050:2052,
1/B23S/2617:2618		Major groove platform
homologous
IL_7RQB_078
NA
IL_4XEJ_3481/B23S/2054:2057,
1/B23S/2611:2615		No text annotation
homologous
IL_9DFE_079
IL_70335.1
IL_4XEJ_3491/B23S/2067:2069,
1/B23S/2442:2443		Single bulged U
homologous
IL_7RQB_080
NA
IL_4XEJ_3501/B23S/2070:2071,
1/B23S/2438:2441		Minor groove platform
homologous
IL_4WF9_081
IL_34520.1
IL_4XEJ_4351/B23S/2081:2083,
1/B23S/2236:2239		No text annotation
homologous
IL_9DFE_082
IL_87316.1
IL_4XEJ_3521/B23S/2085:2087,
1/B23S/2232:2234		No text annotation
homologous
IL_7RQB_083
NA
IL_4XEJ_3551/B23S/2124:2127,
1/B23S/2161:2174		No text annotation
geometric
IL_1MZP_003
IL_75283.2
IL_4XEJ_3571/B23S/2129:2137,
1/B23S/2154:2159		Kink-turn
geometric
IL_4LFB_031
IL_95727.1
IL_4XEJ_3591/B23S/2297:2299,
1/B23S/2317:2321		Isolated tHS basepair with bulges
homologous
IL_7RQB_088
NA
IL_4XEJ_3601/B23S/2350:2353,
1/B23S/2364:2367		Double sheared
homologous
IL_7RQB_089
NA
IL_4XEJ_3611/B23S/2396:2403,
1/B23S/2414:2420		No text annotation
IL_4XEJ_3621/B23S/2453:2454,
1/B23S/2498:2500		Single stack bend
geometric
IL_7RQB_091
NA
IL_4XEJ_3631/B23S/2454:2455,
1/B23S/2496:2498		Major groove platform
homologous
IL_4WF9_090
IL_48076.7
IL_4XEJ_3641/B23S/2457:2459,
1/B23S/2493:2494		Major groove platform
geometric
IL_4WF9_091
IL_48076.7
IL_4XEJ_3651/B23S/2459:2461,
1/B23S/2489:2493		Major groove minor groove platform with extra cWW
homologous
IL_7RQB_094
NA
IL_4XEJ_3661/B23S/2466:2470,
1/B23S/2480:2484		Triple sheared
homologous
IL_7RQB_095
NA
IL_4XEJ_3671/B23S/2507:2508,
1/B23S/2580:2582		Major groove platform
homologous
IL_4WF9_094
IL_46637.1
IL_4XEJ_3681/B23S/2510:2512,
1/B23S/2574:2578		Isolated non-canonical cWW with bulges
geometric
IL_5J7L_340
NA
IL_4XEJ_3691/B23S/2512:2513,
1/B23S/2571:2574		No text annotation
homologous
IL_5J7L_341
NA
IL_4XEJ_3701/B23S/2522:2523,
1/B23S/2540:2543		Major groove platform with intercalation
homologous
IL_7RQB_099
NA
IL_4XEJ_3711/B23S/2591:2592,
1/B23S/2601:2603		Single bulged A
homologous
IL_7RQB_101
NA
IL_4XEJ_3721/B23S/2636:2640,
1/B23S/2774:2782		tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_4XEJ_3731/B23S/2652:2658,
1/B23S/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7RQB_103
NA
IL_4XEJ_4671/B23S/2680:2684,
1/B23S/2725:2727		C-loop
homologous
IL_9DFE_103
IL_63596.12
IL_4XEJ_3751/B23S/2687:2691,
1/B23S/2718:2722		No text annotation
homologous
IL_7RQB_105
NA
IL_4XEJ_3761/B23S/2695:2696,
1/B23S/2711:2714		Multiple bulged bases
homologous
IL_7A0S_097
IL_44609.1
IL_4XEJ_3771/B23S/2737:2742,
1/B23S/2762:2767		UAA/GAN with extra cWW
homologous
IL_7RQB_107
NA
IL_4XEJ_3781/B23S/2838:2839,
1/B23S/2878:2880		Single bulged C
homologous
IL_7RQB_108
NA
IL_4XEJ_4681/B23S/2843:2846,
1/B23S/2870:2874		No text annotation
homologous
IL_9DFE_108
IL_25873.1
IL_4XEJ_3801/B23S/2847:2852,
1/B23S/2865:2869		tHS double platform
geometric
IL_7RQB_110
NA
IL_4XEJ_3811/B5S/17:18,
1/B5S/65:67		Major groove intercalation
homologous
IL_4V9F_101
IL_14190.1
IL_4XEJ_4381/B5S/23:28,
1/B5S/56:60		No text annotation
homologous
IL_5J7L_356
NA
IL_4XEJ_3831/B5S/30:32,
1/B5S/50:54		No text annotation
homologous
IL_4WF9_114
NA
IL_4XEJ_3841/B5S/34:38,
1/B5S/44:48		Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_4XEJ_3851/B5S/71:79,
1/B5S/97:105		Bacterial 5S Loop E
homologous
IL_7RQB_115
NA
IL_4XEJ_4691/BIRE/6153:6157,
1/BIRE/6172:6175		No text annotation

Problematic loops

#loop idProblemSequence
IL_4XEJ_010No text annotation
IL_4XEJ_016Isolated cWS basepair
IL_4XEJ_389No text annotation
IL_4XEJ_030No text annotation
IL_4XEJ_035Isolated non-canonical cWW with bulges
IL_4XEJ_037No text annotation
IL_4XEJ_392Isolated non-canonical cWW pair
IL_4XEJ_040Isolated cWS basepair
IL_4XEJ_393No text annotation
IL_4XEJ_046No text annotation
IL_4XEJ_047Isolated non-canonical cWW pair
IL_4XEJ_048No text annotation
IL_4XEJ_394No text annotation
IL_4XEJ_056No text annotation
IL_4XEJ_057Tandem non-canonical cWW pairs
IL_4XEJ_396No text annotation
IL_4XEJ_065Tandem non-canonical cWW pairs
IL_4XEJ_397No text annotation
IL_4XEJ_069No text annotation
IL_4XEJ_073Isolated non-canonical cWW pair
IL_4XEJ_076Isolated non-canonical cWW pair
IL_4XEJ_083Isolated non-canonical cWW pair
IL_4XEJ_084Isolated non-canonical cWW pair
IL_4XEJ_099Isolated non-canonical cWW pair
IL_4XEJ_100Isolated cWS basepair
IL_4XEJ_401Isolated non-canonical cWW pair
IL_4XEJ_402Tandem non-canonical cWW pairs
IL_4XEJ_112Isolated non-canonical cWW pair
IL_4XEJ_114No text annotation
IL_4XEJ_115No text annotation
IL_4XEJ_403No text annotation
IL_4XEJ_405No text annotation
IL_4XEJ_140Major groove platform with intercalation
IL_4XEJ_146Isolated non-canonical cWW pair
IL_4XEJ_151No text annotation
IL_4XEJ_152No text annotation
IL_4XEJ_155No text annotation
IL_4XEJ_407No text annotation
IL_4XEJ_156Isolated non-canonical cWW pair
IL_4XEJ_448Kink-turn
IL_4XEJ_157Kink-turn
IL_4XEJ_159Isolated non-canonical cWW pair
IL_4XEJ_161Not an internal loop
IL_4XEJ_162Isolated non-canonical cWW pair
IL_4XEJ_170No text annotation
IL_4XEJ_173Isolated non-canonical cWW pair
IL_4XEJ_175No text annotation
IL_4XEJ_181Isolated cWH basepair
IL_4XEJ_409No text annotation
IL_4XEJ_183No text annotation
IL_4XEJ_185Isolated non-canonical cWW pair
IL_4XEJ_188No text annotation
IL_4XEJ_191Isolated non-canonical cWW pair
IL_4XEJ_192No text annotation
IL_4XEJ_410No text annotation
IL_4XEJ_193Isolated non-canonical cWW pair
IL_4XEJ_197Isolated cWH basepair
IL_4XEJ_200Isolated non-canonical cWW pair
IL_4XEJ_412No text annotation
IL_4XEJ_203tWH-tWH-tHW-tHW
IL_4XEJ_413No text annotation
IL_4XEJ_207Isolated non-canonical cWW pair
IL_4XEJ_414No text annotation
IL_4XEJ_223No text annotation
IL_4XEJ_417No text annotation
IL_4XEJ_225No text annotation
IL_4XEJ_227Isolated non-canonical cWW pair
IL_4XEJ_419tSH-tHW-tHS-cWW
IL_4XEJ_420Isolated non-canonical cWW pair
IL_4XEJ_232Isolated non-canonical cWW pair
IL_4XEJ_421No text annotation
IL_4XEJ_236No text annotation
IL_4XEJ_422No text annotation
IL_4XEJ_237Isolated near basepair
IL_4XEJ_241Isolated non-canonical cWW pair
IL_4XEJ_243Isolated non-canonical cWW pair
IL_4XEJ_244No text annotation
IL_4XEJ_424No text annotation
IL_4XEJ_248Isolated non-canonical cWW pair
IL_4XEJ_250Isolated non-canonical cWW pair
IL_4XEJ_425Double sheared with non-canonical cWW
IL_4XEJ_254No text annotation
IL_4XEJ_426No text annotation
IL_4XEJ_259No text annotation
IL_4XEJ_266No text annotation
IL_4XEJ_267No text annotation
IL_4XEJ_269No text annotation
IL_4XEJ_275Double sheared with non-canonical cWW
IL_4XEJ_278No text annotation
IL_4XEJ_281Isolated non-canonical cWW pair
IL_4XEJ_283Isolated non-canonical cWW pair
IL_4XEJ_286Isolated non-canonical cWW pair
IL_4XEJ_298Isolated cWS basepair
IL_4XEJ_301Isolated non-canonical cWW pair
IL_4XEJ_430Isolated non-canonical cWW pair
IL_4XEJ_307Isolated non-canonical cWW pair
IL_4XEJ_308Isolated non-canonical cWW pair
IL_4XEJ_313No text annotation
IL_4XEJ_431No text annotation
IL_4XEJ_320No text annotation
IL_4XEJ_329No text annotation
IL_4XEJ_433No text annotation
IL_4XEJ_341Major groove platform with intercalation
IL_4XEJ_434No text annotation
IL_4XEJ_351No text annotation
IL_4XEJ_353No text annotation
IL_4XEJ_354No text annotation
IL_4XEJ_436No text annotation
IL_4XEJ_356Isolated non-canonical cWW pair
IL_4XEJ_358Isolated cWH basepair
IL_4XEJ_437No text annotation
IL_4XEJ_374C-loop with extra cWW pair
IL_4XEJ_379No text annotation
IL_4XEJ_382No text annotation
IL_4XEJ_439No text annotation
IL_4XEJ_386Isolated non-canonical cWW pair
IL_4XEJ_387No text annotation
IL_4XEJ_440No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4XEJ_0781/A16S/46:47,
1/A16S/361:367,
1/A16S/393:395		No text annotation
geometric
J3_4LFB_010
J3_58657.1
J3_4XEJ_0791/A16S/46:52,
1/A16S/359:367,
1/A16S/393:395		No text annotation
homologous
J3_4LFB_014
J3_63856.1
J3_4XEJ_0371/A16S/586:588,
1/A16S/651:654,
1/A16S/754:755		No text annotation
geometric
J3_1KUQ_001
J3_01633.1
J3_4XEJ_0381/A16S/586:588,
1/A16S/651:655,
1/A16S/751:755		No text annotation
homologous
J3_4LFB_015
J3_17385.5
J3_4XEJ_0391/A16S/672:673,
1/A16S/717:725,
1/A16S/732:734		No text annotation
homologous
J3_4LFB_012
J3_74074.1
J3_4XEJ_0011/A16S/826:829,
1/A16S/857:861,
1/A16S/868:874		No text annotation
homologous
J3_4LFB_001
J3_02285.1
J3_4XEJ_0801/A16S/936:939,
1/A16S/1344:1350,
1/A16S/1372:1379		No text annotation
homologous
J3_4LFB_002
J3_85722.1
J3_4XEJ_0021/A16S/943:946,
1/A16S/1235:1237,
1/A16S/1337:1340		No text annotation
homologous
J3_4LFB_003
J3_44359.1
J3_4XEJ_0031/A16S/955:962,
1/A16S/973:984,
1/A16S/1221:1225		No text annotation
homologous
J3_4LFB_004
J3_88451.1
J3_4XEJ_0041/A16S/990:993,
1/A16S/1045:1047,
1/A16S/1210:1215		No text annotation
homologous
J3_4LFB_005
J3_84394.1
J3_4XEJ_0051/A16S/1003:1006,
1/A16S/1023:1027,
1/A16S/1034:1037		No text annotation
J3_4XEJ_0061/A16S/1063:1068,
1/A16S/1107:1113,
1/A16S/1187:1193		No text annotation
homologous
J3_4LFB_007
J3_01343.1
J3_4XEJ_0811/A16S/1073:1074,
1/A16S/1083:1086,
1/A16S/1099:1102		No text annotation
homologous
J3_4LFB_017
J3_11018.1
J3_4XEJ_0071/A16S/1116:1118,
1/A16S/1155:1158,
1/A16S/1181:1184		No text annotation
homologous
J3_4LFB_008
J3_82365.5
J3_4XEJ_0421/A16S/1116:1118,
1/A16S/1155:1161,
1/A16S/1175:1184		No text annotation
homologous
J3_4LFB_018
J3_40706.1
J3_4XEJ_0081/A16S/1237:1241,
1/A16S/1296:1303,
1/A16S/1334:1337		No text annotation
homologous
J3_4LFB_009
J3_03192.1
J3_4XEJ_0431/A23S/30:31,
1/A23S/474:481,
1/A23S/509:510		No text annotation
geometric
J3_8VTW_036
NA
J3_4XEJ_0441/A23S/30:31,
1/A23S/474:484,
1/A23S/496:510		No text annotation
homologous
J3_4WF9_011
J3_17917.1
J3_4XEJ_0451/A23S/32:35,
1/A23S/445:462,
1/A23S/467:473		No text annotation
J3_4XEJ_0461/A23S/56:57,
1/A23S/70:76,
1/A23S/110:114		No text annotation
homologous
J3_9DFE_004
J3_01004.1
J3_4XEJ_0471/A23S/269:270,
1/A23S/270:271,
1/A23S/357:370		No text annotation
J3_4XEJ_0481/A23S/297:301,
1/A23S/316:325,
1/A23S/337:341		No text annotation
homologous
J3_9DFE_006
J3_77124.1
J3_4XEJ_0091/A23S/683:689,
1/A23S/773:775,
1/A23S/791:794		No text annotation
homologous
J3_7A0S_004
J3_46658.1
J3_4XEJ_0101/A23S/698:700,
1/A23S/732:736,
1/A23S/760:763		No text annotation
homologous
J3_4WF9_003
J3_69816.1
J3_4XEJ_0111/A23S/1298:1303,
1/A23S/1625:1627,
1/A23S/1639:1642		No text annotation
homologous
J3_7RQB_007
NA
J3_4XEJ_0121/A23S/1306:1309,
1/A23S/1605:1611,
1/A23S/1620:1622		No text annotation
homologous
J3_7RQB_008
NA
J3_4XEJ_0501/A23S/1344:1350,
1/A23S/1381:1385,
1/A23S/1402:1403		No text annotation
homologous
J3_9DFE_012
J3_94309.1
J3_4XEJ_0511/A23S/1424:1429,
1/A23S/1564:1565,
1/A23S/1568:1574		No text annotation
homologous
J3_9DFE_013
J3_34864.3
J3_4XEJ_0131/A23S/2091:2093,
1/A23S/2196:2200,
1/A23S/2223:2228		No text annotation
homologous
J3_7RQB_010
NA
J3_4XEJ_0521/A23S/2282:2284,
1/A23S/2384:2395,
1/A23S/2421:2427		No text annotation
homologous
J3_7A0S_020
J3_04772.1
J3_4XEJ_0141/A23S/2295:2297,
1/A23S/2321:2323,
1/A23S/2332:2337		No text annotation
homologous
J3_7RQB_011
NA
J3_4XEJ_0151/A23S/2517:2520,
1/A23S/2545:2547,
1/A23S/2561:2567		No text annotation
homologous
J3_9DFE_017
J3_32601.6
J3_4XEJ_0531/A23S/2814:2815,
1/A23S/2831:2836,
1/A23S/2882:2886		No text annotation
homologous
J3_9DFE_019
J3_76911.2
J3_4XEJ_0541/A5S/11:16,
1/A5S/68:69,
1/A5S/107:109		No text annotation
homologous
J3_9DFE_020
J3_26985.1
J3_4XEJ_0551/B16S/46:47,
1/B16S/361:367,
1/B16S/393:395		No text annotation
geometric
J3_4LFB_010
J3_58657.1
J3_4XEJ_0561/B16S/46:52,
1/B16S/359:367,
1/B16S/393:395		No text annotation
homologous
J3_4LFB_014
J3_63856.1
J3_4XEJ_0571/B16S/586:588,
1/B16S/651:654,
1/B16S/754:755		No text annotation
geometric
J3_4LFB_011
J3_01633.1
J3_4XEJ_0581/B16S/586:588,
1/B16S/651:655,
1/B16S/751:755		No text annotation
homologous
J3_4LFB_015
J3_17385.5
J3_4XEJ_0591/B16S/672:673,
1/B16S/717:725,
1/B16S/732:734		No text annotation
homologous
J3_4LFB_012
J3_74074.1
J3_4XEJ_0171/B16S/826:829,
1/B16S/857:861,
1/B16S/868:874		No text annotation
homologous
J3_4LFB_001
J3_02285.1
J3_4XEJ_0181/B16S/936:939,
1/B16S/1344:1350,
1/B16S/1372:1379		No text annotation
homologous
J3_4LFB_002
J3_85722.1
J3_4XEJ_0191/B16S/943:946,
1/B16S/1235:1237,
1/B16S/1337:1340		No text annotation
homologous
J3_4LFB_003
J3_44359.1
J3_4XEJ_0821/B16S/955:962,
1/B16S/973:984,
1/B16S/1221:1225		No text annotation
homologous
J3_4LFB_004
J3_88451.1
J3_4XEJ_0211/B16S/990:993,
1/B16S/1045:1047,
1/B16S/1210:1215		No text annotation
homologous
J3_4LFB_005
J3_84394.1
J3_4XEJ_0611/B16S/990:997,
1/B16S/1044:1047,
1/B16S/1210:1215		No text annotation
homologous
J3_4LFB_016
J3_28881.1
J3_4XEJ_0221/B16S/1003:1006,
1/B16S/1023:1027,
1/B16S/1034:1037		No text annotation
J3_4XEJ_0231/B16S/1063:1068,
1/B16S/1107:1113,
1/B16S/1187:1193		No text annotation
homologous
J3_4LFB_007
J3_01343.1
J3_4XEJ_0831/B16S/1073:1074,
1/B16S/1083:1086,
1/B16S/1099:1102		No text annotation
homologous
J3_4LFB_017
J3_11018.1
J3_4XEJ_0251/B16S/1116:1118,
1/B16S/1155:1158,
1/B16S/1181:1184		No text annotation
homologous
J3_4LFB_008
J3_82365.5
J3_4XEJ_0631/B16S/1116:1118,
1/B16S/1155:1161,
1/B16S/1175:1184		No text annotation
homologous
J3_4LFB_018
J3_40706.1
J3_4XEJ_0261/B16S/1237:1241,
1/B16S/1296:1303,
1/B16S/1334:1337		No text annotation
homologous
J3_4LFB_009
J3_03192.1
J3_4XEJ_0641/B23S/30:31,
1/B23S/474:481,
1/B23S/509:510		No text annotation
geometric
J3_8VTW_036
NA
J3_4XEJ_0651/B23S/30:31,
1/B23S/474:484,
1/B23S/496:510		No text annotation
homologous
J3_4WF9_011
J3_17917.1
J3_4XEJ_0661/B23S/32:35,
1/B23S/445:461,
1/B23S/468:473		No text annotation
homologous
J3_9DFE_003
J3_07616.1
J3_4XEJ_0671/B23S/56:57,
1/B23S/70:76,
1/B23S/110:114		No text annotation
homologous
J3_9DFE_004
J3_01004.1
J3_4XEJ_0841/B23S/269:270C,
1/B23S/270W:271D,
1/B23S/357O:370		No text annotation
homologous
J3_9DFE_005
J3_97971.2
J3_4XEJ_0691/B23S/297:301,
1/B23S/316:325,
1/B23S/337:341		No text annotation
homologous
J3_9DFE_006
J3_77124.1
J3_4XEJ_0271/B23S/683:689,
1/B23S/773:775,
1/B23S/791:794		No text annotation
homologous
J3_7A0S_004
J3_46658.1
J3_4XEJ_0281/B23S/698:700,
1/B23S/732:736,
1/B23S/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_4XEJ_0301/B23S/1298:1303,
1/B23S/1625:1627,
1/B23S/1639:1642		No text annotation
homologous
J3_7RQB_007
NA
J3_4XEJ_0311/B23S/1306:1309,
1/B23S/1605:1611,
1/B23S/1620:1622		No text annotation
homologous
J3_7RQB_008
NA
J3_4XEJ_0711/B23S/1344:1350,
1/B23S/1381:1385,
1/B23S/1402:1403		No text annotation
homologous
J3_9DFE_012
J3_94309.1
J3_4XEJ_0721/B23S/1424:1429,
1/B23S/1564:1565,
1/B23S/1568:1574		No text annotation
homologous
J3_9DFE_013
J3_34864.3
J3_4XEJ_0731/B23S/2091:2093,
1/B23S/2196:2200,
1/B23S/2223:2228		No text annotation
homologous
J3_9DFE_014
J3_17460.1
J3_4XEJ_0851/B23S/2282:2284,
1/B23S/2384:2395,
1/B23S/2421:2427		No text annotation
homologous
J3_9DFE_015
J3_04772.1
J3_4XEJ_0331/B23S/2295:2297,
1/B23S/2321:2323,
1/B23S/2332:2337		No text annotation
homologous
J3_7RQB_011
NA
J3_4XEJ_0341/B23S/2517:2520,
1/B23S/2545:2547,
1/B23S/2561:2567		No text annotation
geometric
J3_8VTW_008
NA
J3_4XEJ_0761/B23S/2814:2815,
1/B23S/2831:2836,
1/B23S/2882:2886		No text annotation
homologous
J3_9DFE_019
J3_76911.2
J3_4XEJ_0861/B5S/11:16,
1/B5S/68:69,
1/B5S/107:109		No text annotation
homologous
J3_9DFE_020
J3_26985.1
J4_4XEJ_0011/A16S/115:122,
1/A16S/239:240,
1/A16S/286:289,
1/A16S/311:312		No text annotation
homologous
J4_4LFB_001
J4_90044.1
J4_4XEJ_0021/A16S/142:144,
1/A16S/178:183,
1/A16S/194:198,
1/A16S/219:221		No text annotation
homologous
J4_4LFB_002
J4_88771.1
J4_4XEJ_0031/A16S/575:577,
1/A16S/764:769,
1/A16S/810:821,
1/A16S/879:880		No text annotation
homologous
J4_4LFB_003
J4_14595.1
J4_4XEJ_0041/A23S/268:269,
1/A23S/370:375,
1/A23S/399:406,
1/A23S/421:424		No text annotation
homologous
J4_9DFE_001
J4_94698.1
J4_4XEJ_0051/A23S/297:301,
1/A23S/316:319,
1/A23S/323:325,
1/A23S/337:341		No text annotation
homologous
J4_9DFE_002
J4_16174.1
J4_4XEJ_0281/A23S/601:604,
1/A23S/624:628,
1/A23S/635:638,
1/A23S/650:656		No text annotation
homologous
J4_5J7L_020
NA
J4_4XEJ_0071/A23S/1270:1276,
1/A23S/1294:1295,
1/A23S/1645:1648,
1/A23S/2009:2010		No text annotation
homologous
J4_9DFE_003
J4_64571.6
J4_4XEJ_0081/A23S/1310:1314,
1/A23S/1338:1343,
1/A23S/1404:1405,
1/A23S/1597:1604		No text annotation
homologous
J4_9DFE_004
J4_77353.1
J4_4XEJ_0091/A23S/1444:1445,
1/A23S/1466:1467,
1/A23S/1525:1526,
1/A23S/1546:1547		No text annotation
homologous
J4_9DFE_006
J4_75575.1
J4_4XEJ_0291/A23S/1772:1776,
1/A23S/1788:1792,
1/A23S/1827:1830,
1/A23S/1975:1979		No text annotation
homologous
J4_9DFE_007
J4_61477.6
J4_4XEJ_0111/A23S/1833:1835,
1/A23S/1905:1906,
1/A23S/1924:1933,
1/A23S/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_4XEJ_0121/A23S/2285:2289,
1/A23S/2343:2347,
1/A23S/2370:2372,
1/A23S/2381:2383		No text annotation
homologous
J4_4WF9_008
J4_98139.1
J4_4XEJ_0301/A23S/2643:2646,
1/A23S/2674:2676,
1/A23S/2731:2735,
1/A23S/2769:2771		No text annotation
homologous
J4_9DFE_010
J4_77044.5
J4_4XEJ_0311/B16S/115:122,
1/B16S/239:240,
1/B16S/286:289,
1/B16S/311:312		No text annotation
homologous
J4_4LFB_001
J4_90044.1
J4_4XEJ_0321/B16S/142:144,
1/B16S/178:183,
1/B16S/194:198,
1/B16S/219:221		No text annotation
homologous
J4_4LFB_002
J4_88771.1
J4_4XEJ_0161/B16S/575:577,
1/B16S/764:769,
1/B16S/810:821,
1/B16S/879:880		No text annotation
homologous
J4_4LFB_003
J4_14595.1
J4_4XEJ_0171/B23S/268:269,
1/B23S/370:375,
1/B23S/399:406,
1/B23S/421:424		No text annotation
homologous
J4_9DFE_001
J4_94698.1
J4_4XEJ_0181/B23S/297:301,
1/B23S/316:319,
1/B23S/323:325,
1/B23S/337:341		No text annotation
homologous
J4_9DFE_002
J4_16174.1
J4_4XEJ_0191/B23S/601:604,
1/B23S/624:628,
1/B23S/635:638,
1/B23S/650:656		No text annotation
homologous
J4_5J7L_020
NA
J4_4XEJ_0201/B23S/1270:1276,
1/B23S/1294:1295,
1/B23S/1645:1648,
1/B23S/2009:2010		No text annotation
homologous
J4_9DFE_003
J4_64571.6
J4_4XEJ_0331/B23S/1310:1314,
1/B23S/1338:1343,
1/B23S/1404:1405,
1/B23S/1597:1604		No text annotation
homologous
J4_9DFE_004
J4_77353.1
J4_4XEJ_0341/B23S/1313:1314,
1/B23S/1338:1343,
1/B23S/1404:1405,
1/B23S/1597:1603		No text annotation
homologous
J4_9DFE_005
J4_48150.1
J4_4XEJ_0351/B23S/1444:1445,
1/B23S/1466:1467,
1/B23S/1525:1526,
1/B23S/1546:1547		No text annotation
homologous
J4_9DFE_006
J4_75575.1
J4_4XEJ_0241/B23S/1772:1776,
1/B23S/1788:1792,
1/B23S/1827:1830,
1/B23S/1975:1979		No text annotation
homologous
J4_9DFE_007
J4_61477.6
J4_4XEJ_0251/B23S/1833:1835,
1/B23S/1905:1906,
1/B23S/1924:1933,
1/B23S/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_4XEJ_0361/B23S/2285:2289,
1/B23S/2343:2347,
1/B23S/2370:2372,
1/B23S/2381:2383		No text annotation
homologous
J4_4WF9_008
J4_98139.1
J4_4XEJ_0371/B23S/2643:2646,
1/B23S/2674:2676,
1/B23S/2731:2735,
1/B23S/2769:2771		No text annotation
homologous
J4_9DFE_010
J4_77044.5
J5_4XEJ_0011/A16S/36:39,
1/A16S/403:406,
1/A16S/436:442,
1/A16S/492:500,
1/A16S/545:548		No text annotation
homologous
J5_4LFB_001
J5_70703.1
J5_4XEJ_0191/A16S/58:61,
1/A16S/106:113,
1/A16S/314:316,
1/A16S/337:339,
1/A16S/350:354		No text annotation
homologous
J5_4LFB_002
J5_58574.1
J5_4XEJ_0031/A23S/47:54,
1/A23S/116:121,
1/A23S/130:131,
1/A23S/148:150,
1/A23S/176:178		No text annotation
homologous
J5_5J7L_013
NA
J5_4XEJ_0041/A23S/268:270,
1/A23S/270:271,
1/A23S/357:375,
1/A23S/399:406,
1/A23S/421:424		No text annotation
J5_4XEJ_0051/A23S/531:533,
1/A23S/560:564,
1/A23S/577:579,
1/A23S/1261:1262,
1/A23S/2017:2018		No text annotation
homologous
J5_9DFE_003
J5_43153.6
J5_4XEJ_0061/A23S/584:589,
1/A23S/668:671,
1/A23S/809:812,
1/A23S/1195:1196,
1/A23S/1250:1256		No text annotation
homologous
J5_9DFE_004
J5_74302.6
J5_4XEJ_0071/A23S/1674:1682,
1/A23S/1706:1707,
1/A23S/1751:1752,
1/A23S/1756:1764,
1/A23S/1988:1990		No text annotation
homologous
J5_9DFE_005
J5_99177.1
J5_4XEJ_0081/A23S/2054:2064,
1/A23S/2446:2453,
1/A23S/2500:2507,
1/A23S/2582:2588,
1/A23S/2606:2615		No text annotation
J5_4XEJ_0091/A23S/2074:2077,
1/A23S/2243:2246,
1/A23S/2258:2259,
1/A23S/2281:2282,
1/A23S/2427:2435		No text annotation
homologous
J5_9DFE_007
J5_39529.2
J5_4XEJ_0101/B16S/36:39,
1/B16S/403:406,
1/B16S/436:442,
1/B16S/492:500,
1/B16S/545:548		No text annotation
homologous
J5_4LFB_001
J5_70703.1
J5_4XEJ_0201/B16S/58:61,
1/B16S/106:113,
1/B16S/314:316,
1/B16S/337:339,
1/B16S/350:354		No text annotation
homologous
J5_4LFB_002
J5_58574.1
J5_4XEJ_0121/B23S/47:54,
1/B23S/116:121,
1/B23S/130:131,
1/B23S/148:150,
1/B23S/176:178		No text annotation
homologous
J5_9DFE_001
J5_27223.1
J5_4XEJ_0211/B23S/268:270C,
1/B23S/270W:271D,
1/B23S/357O:375,
1/B23S/399:406,
1/B23S/421:424		No text annotation
J5_4XEJ_0131/B23S/268:270,
1/B23S/270:271,
1/B23S/357:375,
1/B23S/399:406,
1/B23S/421:424		No text annotation
J5_4XEJ_0141/B23S/531:533,
1/B23S/560:564,
1/B23S/577:579,
1/B23S/1261:1262,
1/B23S/2017:2018		No text annotation
homologous
J5_9DFE_003
J5_43153.6
J5_4XEJ_0151/B23S/584:589,
1/B23S/668:671,
1/B23S/809:812,
1/B23S/1195:1196,
1/B23S/1250:1256		No text annotation
homologous
J5_9DFE_004
J5_74302.6
J5_4XEJ_0161/B23S/1674:1682,
1/B23S/1706:1707,
1/B23S/1751:1752,
1/B23S/1756:1764,
1/B23S/1988:1990		No text annotation
homologous
J5_9DFE_005
J5_99177.1
J5_4XEJ_0171/B23S/2057:2064,
1/B23S/2446:2453,
1/B23S/2500:2507,
1/B23S/2582:2588,
1/B23S/2606:2611		No text annotation
J5_4XEJ_0181/B23S/2074:2077,
1/B23S/2243:2246,
1/B23S/2258:2259,
1/B23S/2281:2282,
1/B23S/2427:2435		No text annotation
homologous
J5_9DFE_007
J5_39529.2
J6_4XEJ_0051/A23S/45:46,
1/A23S/179:183,
1/A23S/214:224,
1/A23S/231:235,
1/A23S/262:266,
1/A23S/426:433		No text annotation
J6_4XEJ_0021/A23S/2074:2077,
1/A23S/2243:2246,
1/A23S/2258:2259,
1/A23S/2281:2284,
1/A23S/2384:2395,
1/A23S/2421:2435		No text annotation
J6_4XEJ_0031/B23S/45:46,
1/B23S/179:183,
1/B23S/214:224,
1/B23S/231:235,
1/B23S/262:266,
1/B23S/426:433		No text annotation
J6_4XEJ_0061/B23S/2074:2077,
1/B23S/2243:2246,
1/B23S/2258:2259,
1/B23S/2281:2284,
1/B23S/2384:2395,
1/B23S/2421:2435		No text annotation
J6_4XEJ_0041/B23S/2074:2077,
1/B23S/2243:2246,
1/B23S/2258:2259,
1/B23S/2281:2284,
1/B23S/2384:2396,
1/B23S/2420:2435		No text annotation
J7_4XEJ_0041/A23S/817:822,
1/A23S/835:836,
1/A23S/943:946,
1/A23S/971:976,
1/A23S/987:991,
1/A23S/1163:1164,
1/A23S/1185:1190		No text annotation
J7_4XEJ_0051/B23S/8:15,
1/B23S/525:531,
1/B23S/2018:2023,
1/B23S/2040:2043,
1/B23S/2625:2630,
1/B23S/2788:2811,
1/B23S/2889:2895		No text annotation
J7_4XEJ_0061/B23S/817:822,
1/B23S/835:836,
1/B23S/943:946,
1/B23S/971:976,
1/B23S/987:991,
1/B23S/1163:1164,
1/B23S/1185:1190		No text annotation
J8_4XEJ_0021/A23S/8:15,
1/A23S/525:531,
1/A23S/2018:2023,
1/A23S/2040:2043,
1/A23S/2625:2630,
1/A23S/2788:2792,
1/A23S/2804:2811,
1/A23S/2889:2895		No text annotation

Problematic loops

#loop idProblemSequence
J3_4XEJ_035No text annotation
J3_4XEJ_036No text annotation
J3_4XEJ_040No text annotation
J3_4XEJ_041No text annotation
J3_4XEJ_049No text annotation
J3_4XEJ_016No text annotation
J3_4XEJ_060No text annotation
J3_4XEJ_020No text annotation
J3_4XEJ_024No text annotation
J3_4XEJ_062No text annotation
J3_4XEJ_068No text annotation
J3_4XEJ_029No text annotation
J3_4XEJ_070No text annotation
J3_4XEJ_032No text annotation
J3_4XEJ_074No text annotation
J3_4XEJ_075No text annotation
J3_4XEJ_077No text annotation
J4_4XEJ_006No text annotation
J4_4XEJ_010No text annotation
J4_4XEJ_013No text annotation
J4_4XEJ_014No text annotation
J4_4XEJ_015No text annotation
J4_4XEJ_021No text annotation
J4_4XEJ_022No text annotation
J4_4XEJ_023No text annotation
J4_4XEJ_026No text annotation
J4_4XEJ_027No text annotation
J5_4XEJ_002No text annotation
J5_4XEJ_011No text annotation
J6_4XEJ_001No text annotation
J7_4XEJ_001No text annotation
J7_4XEJ_002No text annotation
J7_4XEJ_003No text annotation
J8_4XEJ_001No text annotation

Coloring options:
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