HL_4XEJ_019

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GCUAACGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_019 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3591

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4XEJ|1|A16S|G|861
4XEJ|1|A16S|C|862
4XEJ|1|A16S|U|863
4XEJ|1|A16S|A|864
4XEJ|1|A16S|A|865
4XEJ|1|A16S|C|866
4XEJ|1|A16S|G|867
4XEJ|1|A16S|C|868

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain AS05

30S ribosomal protein S5

Chain AS08

30S ribosomal protein S8