HL_4XEJ_026

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

4XEJ|1|A16S|U|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_026 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.2134

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

4XEJ|1|A16S|G|1134
4XEJ|1|A16S|U|1135
4XEJ|1|A16S|U|1136
4XEJ|1|A16S|C|1137
4XEJ|1|A16S|G|1138
4XEJ|1|A16S|G|1139
4XEJ|1|A16S|C|1140

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain AS09

30S ribosomal protein S9