HL_4XEJ_030

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGAUCAGCCAUGCC

Length

14 nucleotides

Bulged bases

4XEJ|1|A16S|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4XEJ|1|A16S|G|1355
4XEJ|1|A16S|G|1356
4XEJ|1|A16S|A|1357
4XEJ|1|A16S|U|1358
4XEJ|1|A16S|C|1359
4XEJ|1|A16S|A|1360
4XEJ|1|A16S|G|1361
4XEJ|1|A16S|C|1362
4XEJ|1|A16S|C|1362|||A
4XEJ|1|A16S|A|1363
4XEJ|1|A16S|U|1364
4XEJ|1|A16S|G|1365
4XEJ|1|A16S|C|1366
4XEJ|1|A16S|C|1367

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain AS09

30S ribosomal protein S9

Chain AS10

30S ribosomal protein S10

Chain AS13

30S ribosomal protein S13

Chain AS14

30S ribosomal protein S14

Chain ATHX

30S ribosomal protein Thx