HL_4XEJ_032

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_032 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.097

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4XEJ|1|A16S|C|1515
4XEJ|1|A16S|G|1516
4XEJ|1|A16S|G|1517
4XEJ|1|A16S|A|1518
4XEJ|1|A16S|A|1519
4XEJ|1|A16S|G|1520

Current chains

Chain A16S

16S ribosomal RNA

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA