HL_4XEJ_034

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGGUAGCGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_034 not in the Motif Atlas

Homologous match to HL_7RQB_002

Geometric discrepancy: 0.1623

The information below is about HL_7RQB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

4XEJ|1|A23S|C|87
4XEJ|1|A23S|G|88
4XEJ|1|A23S|G|89
4XEJ|1|A23S|U|90
4XEJ|1|A23S|A|91
4XEJ|1|A23S|G|92
4XEJ|1|A23S|C|93
4XEJ|1|A23S|G|94
4XEJ|1|A23S|G|95

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL23

50S ribosomal protein L23

Chain AL24

50S ribosomal protein L24

Chain AL29

50S ribosomal protein L29