HL_4XEJ_047

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_047 not in the Motif Atlas

Homologous match to HL_7A0S_015

Geometric discrepancy: 0.1139

The information below is about HL_7A0S_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4XEJ|1|A23S|C|462
4XEJ|1|A23S|G|463
4XEJ|1|A23S|U|464
4XEJ|1|A23S|G|465
4XEJ|1|A23S|A|466
4XEJ|1|A23S|G|467

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL04

50S ribosomal protein L4

Chain AL34

50S ribosomal protein L34