HL_4XEJ_048

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGGGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_048 not in the Motif Atlas

Homologous match to HL_4WF9_016

Geometric discrepancy: 0.1306

The information below is about HL_4WF9_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4XEJ|1|A23S|C|487
4XEJ|1|A23S|G|488
4XEJ|1|A23S|G|489
4XEJ|1|A23S|G|491
4XEJ|1|A23S|A|492
4XEJ|1|A23S|G|493

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL22

50S ribosomal protein L22