HL_4XEJ_052

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_052 not in the Motif Atlas

Homologous match to HL_7RQB_020

Geometric discrepancy: 0.1556

The information below is about HL_7RQB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4XEJ|1|A23S|G|629
4XEJ|1|A23S|G|630
4XEJ|1|A23S|A|631
4XEJ|1|A23S|A|632
4XEJ|1|A23S|A|633
4XEJ|1|A23S|C|634

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL15

50S ribosomal protein L15

Chain AL35

50S ribosomal protein L35