HL_4XEJ_058

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_058 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.3665

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

4XEJ|1|A23S|C|884
4XEJ|1|A23S|C|885
4XEJ|1|A23S|C|886
4XEJ|1|A23S|A|887
4XEJ|1|A23S|C|888
4XEJ|1|A23S|C|889
4XEJ|1|A23S|A|890
4XEJ|1|A23S|G|892

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AS13

30S ribosomal protein S13

Chain AS19

30S ribosomal protein S19