HL_4XEJ_068

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4XEJ|1|A23S|U|1396, 4XEJ|1|A23S|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_068 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1189

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4XEJ|1|A23S|G|1389
4XEJ|1|A23S|U|1390
4XEJ|1|A23S|U|1391
4XEJ|1|A23S|A|1392
4XEJ|1|A23S|A|1393
4XEJ|1|A23S|U|1394
4XEJ|1|A23S|A|1395
4XEJ|1|A23S|U|1396
4XEJ|1|A23S|U|1397
4XEJ|1|A23S|C|1398

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL23

50S ribosomal protein L23