HL_4XEJ_089

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_089 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.1365

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4XEJ|1|A23S|C|2324
4XEJ|1|A23S|G|2325
4XEJ|1|A23S|C|2326
4XEJ|1|A23S|A|2327
4XEJ|1|A23S|A|2328
4XEJ|1|A23S|G|2329
4XEJ|1|A23S|G|2330
4XEJ|1|A23S|G|2331

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL05

50S ribosomal protein L5

Chain AL27

50S ribosomal protein L27