HL_4XEJ_093

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_093 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.2974

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4XEJ|1|A23S|C|2471
4XEJ|1|A23S|G|2472
4XEJ|1|A23S|U|2473
4XEJ|1|A23S|C|2474
4XEJ|1|A23S|C|2475
4XEJ|1|A23S|A|2476
4XEJ|1|A23S|C|2477
4XEJ|1|A23S|A|2478
4XEJ|1|A23S|G|2479

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL16

50S ribosomal protein L16