HL_4XEJ_094

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUGAAGAAGG

Length

10 nucleotides

Bulged bases

4XEJ|1|A23S|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_094 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3437

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

4XEJ|1|A23S|C|2527
4XEJ|1|A23S|U|2528
4XEJ|1|A23S|G|2529
4XEJ|1|A23S|A|2530
4XEJ|1|A23S|A|2531
4XEJ|1|A23S|G|2532
4XEJ|1|A23S|A|2533
4XEJ|1|A23S|A|2534
4XEJ|1|A23S|G|2535
4XEJ|1|A23S|G|2536

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL06

50S ribosomal protein L6