HL_4XEJ_106
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4XEJ_106 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.1373
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_31940.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
4XEJ|1|B16S|U|12
4XEJ|1|B16S|U|13
4XEJ|1|B16S|U|14
4XEJ|1|B16S|G|15
4XEJ|1|B16S|A|16
4XEJ|1|B16S|U|17
4XEJ|1|B16S|C|18
4XEJ|1|B16S|C|19
4XEJ|1|B16S|U|20
4XEJ|1|B16S|G|21
4XEJ|1|B16S|G|22
Current chains
- Chain B16S
- 16S ribosomal RNA
Nearby chains
- Chain BS05
- 30S ribosomal protein S5
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