HL_4XEJ_113

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_113 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1322

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4XEJ|1|B16S|C|320
4XEJ|1|B16S|A|321
4XEJ|1|B16S|C|322
4XEJ|1|B16S|U|323
4XEJ|1|B16S|G|324
4XEJ|1|B16S|A|325
4XEJ|1|B16S|G|326
4XEJ|1|B16S|A|327
4XEJ|1|B16S|C|328
4XEJ|1|B16S|A|329
4XEJ|1|B16S|C|330
4XEJ|1|B16S|G|331
4XEJ|1|B16S|G|332
4XEJ|1|B16S|G|333

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BS16

30S ribosomal protein S16

Chain BS20

30S ribosomal protein S20