HL_4XEJ_197

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4XEJ|1|B23S|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_197 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1447

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

4XEJ|1|B23S|C|2404
4XEJ|1|B23S|G|2405
4XEJ|1|B23S|U|2406
4XEJ|1|B23S|G|2407
4XEJ|1|B23S|U|2408
4XEJ|1|B23S|G|2409
4XEJ|1|B23S|G|2410
4XEJ|1|B23S|A|2411
4XEJ|1|B23S|A|2412
4XEJ|1|B23S|G|2413

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL15

50S ribosomal protein L15