HL_4XEJ_210

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UUAAGUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14612.2

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

10

Unit IDs

4XEJ|1|BIRE|U|6161
4XEJ|1|BIRE|U|6162
4XEJ|1|BIRE|A|6163
4XEJ|1|BIRE|A|6164
4XEJ|1|BIRE|G|6165
4XEJ|1|BIRE|U|6166
4XEJ|1|BIRE|G|6167
4XEJ|1|BIRE|G|6168

Current chains

Chain BIRE

IRES RNA

Nearby chains

Chain B16S

Small subunit ribosomal RNA; SSU rRNA

Chain B23S

Large subunit ribosomal RNA; LSU rRNA

Chain BS09

30S ribosomal protein S9