HL_4XEJ_212

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUGGCUACCUGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_212 not in the Motif Atlas

Homologous match to HL_5J7L_134

Geometric discrepancy: 0.5623

The information below is about HL_5J7L_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35677.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4XEJ|1|A23S|G|58
4XEJ|1|A23S|U|59
4XEJ|1|A23S|G|60
4XEJ|1|A23S|G|61
4XEJ|1|A23S|C|62
4XEJ|1|A23S|U|63
4XEJ|1|A23S|A|64
4XEJ|1|A23S|C|65
4XEJ|1|A23S|C|66
4XEJ|1|A23S|U|67
4XEJ|1|A23S|G|68
4XEJ|1|A23S|C|69

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL23

50S ribosomal protein L23

Chain AL29

50S ribosomal protein L29

Chain AL34

50S ribosomal protein L34