HL_4XEJ_241

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CAAGAG

Length

6 nucleotides

Bulged bases

4XEJ|1|A23S|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_241 not in the Motif Atlas

Homologous match to HL_9DFE_039

Geometric discrepancy: 0.1823

The information below is about HL_9DFE_039

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

4XEJ|1|A23S|C|1630|||A
4XEJ|1|A23S|A|1631
4XEJ|1|A23S|A|1632
4XEJ|1|A23S|G|1633
4XEJ|1|A23S|A|1634
4XEJ|1|A23S|G|1635

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains